Strain Fitness in Variovorax sp. OAS795 around ABID97_RS15840

Experiment: Adenine (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABID97_RS15835 and ABID97_RS15840 are separated by 54 nucleotidesABID97_RS15840 and ABID97_RS15845 are separated by 121 nucleotidesABID97_RS15845 and ABID97_RS15850 are separated by 12 nucleotides ABID97_RS15835: ABID97_RS15835 - tripartite tricarboxylate transporter substrate binding protein, at 3,280,603 to 3,281,580 _RS15835 ABID97_RS15840: ABID97_RS15840 - aminotransferase class V-fold PLP-dependent enzyme, at 3,281,635 to 3,282,879 _RS15840 ABID97_RS15845: ABID97_RS15845 - GntR family transcriptional regulator, at 3,283,001 to 3,283,696 _RS15845 ABID97_RS15850: ABID97_RS15850 - FAD-linked oxidase C-terminal domain-containing protein, at 3,283,709 to 3,286,786 _RS15850 Position (kb) 3281 3282 3283Strain fitness (log2 ratio) -1 0 1at 3280.715 kb on + strand, within ABID97_RS15835at 3280.715 kb on + strand, within ABID97_RS15835at 3280.715 kb on + strand, within ABID97_RS15835at 3280.716 kb on - strand, within ABID97_RS15835at 3281.027 kb on + strand, within ABID97_RS15835at 3281.346 kb on - strand, within ABID97_RS15835at 3282.078 kb on - strand, within ABID97_RS15840at 3282.608 kb on + strand, within ABID97_RS15840at 3282.683 kb on + strand, within ABID97_RS15840at 3282.935 kb on + strandat 3283.164 kb on + strand, within ABID97_RS15845at 3283.397 kb on + strand, within ABID97_RS15845at 3283.467 kb on - strand, within ABID97_RS15845at 3283.847 kb on + strandat 3283.847 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Adenine (C)
remove
3,280,715 + ABID97_RS15835 0.11 -0.7
3,280,715 + ABID97_RS15835 0.11 -0.5
3,280,715 + ABID97_RS15835 0.11 -0.4
3,280,716 - ABID97_RS15835 0.12 +0.0
3,281,027 + ABID97_RS15835 0.43 -0.8
3,281,346 - ABID97_RS15835 0.76 +0.4
3,282,078 - ABID97_RS15840 0.36 +0.5
3,282,608 + ABID97_RS15840 0.78 +0.4
3,282,683 + ABID97_RS15840 0.84 +1.0
3,282,935 + +0.2
3,283,164 + ABID97_RS15845 0.23 +0.3
3,283,397 + ABID97_RS15845 0.57 -0.3
3,283,467 - ABID97_RS15845 0.67 -0.4
3,283,847 + +0.5
3,283,847 + -0.0

Or see this region's nucleotide sequence