Experiment: Adenine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS15835 and ABID97_RS15840 are separated by 54 nucleotides ABID97_RS15840 and ABID97_RS15845 are separated by 121 nucleotides ABID97_RS15845 and ABID97_RS15850 are separated by 12 nucleotides
ABID97_RS15835: ABID97_RS15835 - tripartite tricarboxylate transporter substrate binding protein, at 3,280,603 to 3,281,580
_RS15835
ABID97_RS15840: ABID97_RS15840 - aminotransferase class V-fold PLP-dependent enzyme, at 3,281,635 to 3,282,879
_RS15840
ABID97_RS15845: ABID97_RS15845 - GntR family transcriptional regulator, at 3,283,001 to 3,283,696
_RS15845
ABID97_RS15850: ABID97_RS15850 - FAD-linked oxidase C-terminal domain-containing protein, at 3,283,709 to 3,286,786
_RS15850
Position (kb)
3281
3282
3283 Strain fitness (log2 ratio)
-1
0
1 at 3280.715 kb on + strand, within ABID97_RS15835 at 3280.715 kb on + strand, within ABID97_RS15835 at 3280.715 kb on + strand, within ABID97_RS15835 at 3280.716 kb on - strand, within ABID97_RS15835 at 3281.027 kb on + strand, within ABID97_RS15835 at 3281.346 kb on - strand, within ABID97_RS15835 at 3282.078 kb on - strand, within ABID97_RS15840 at 3282.608 kb on + strand, within ABID97_RS15840 at 3282.683 kb on + strand, within ABID97_RS15840 at 3282.935 kb on + strand at 3283.164 kb on + strand, within ABID97_RS15845 at 3283.397 kb on + strand, within ABID97_RS15845 at 3283.467 kb on - strand, within ABID97_RS15845 at 3283.847 kb on + strand at 3283.847 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Adenine (C) remove 3,280,715 + ABID97_RS15835 0.11 -0.7 3,280,715 + ABID97_RS15835 0.11 -0.5 3,280,715 + ABID97_RS15835 0.11 -0.4 3,280,716 - ABID97_RS15835 0.12 +0.0 3,281,027 + ABID97_RS15835 0.43 -0.8 3,281,346 - ABID97_RS15835 0.76 +0.4 3,282,078 - ABID97_RS15840 0.36 +0.5 3,282,608 + ABID97_RS15840 0.78 +0.4 3,282,683 + ABID97_RS15840 0.84 +1.0 3,282,935 + +0.2 3,283,164 + ABID97_RS15845 0.23 +0.3 3,283,397 + ABID97_RS15845 0.57 -0.3 3,283,467 - ABID97_RS15845 0.67 -0.4 3,283,847 + +0.5 3,283,847 + -0.0
Or see this region's nucleotide sequence