Experiment: Adenine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS15205 and ABID97_RS15210 overlap by 17 nucleotides ABID97_RS15210 and ABID97_RS15215 overlap by 4 nucleotides ABID97_RS15215 and ABID97_RS15220 overlap by 8 nucleotides ABID97_RS15220 and ABID97_RS15225 overlap by 4 nucleotides ABID97_RS15225 and ABID97_RS15230 are separated by 4 nucleotides ABID97_RS15230 and ABID97_RS15235 overlap by 1 nucleotides
ABID97_RS15205: ABID97_RS15205 - phage tail protein, at 3,149,718 to 3,150,230
_RS15205
ABID97_RS15210: ABID97_RS15210 - lysis system i-spanin subunit Rz, at 3,150,214 to 3,150,744
_RS15210
ABID97_RS15215: ABID97_RS15215 - lysozyme, at 3,150,741 to 3,151,316
_RS15215
ABID97_RS15220: ABID97_RS15220 - hypothetical protein, at 3,151,309 to 3,151,608
_RS15220
ABID97_RS15225: ABID97_RS15225 - hypothetical protein, at 3,151,605 to 3,152,018
_RS15225
ABID97_RS15230: ABID97_RS15230 - tail protein X, at 3,152,023 to 3,152,226
_RS15230
ABID97_RS15235: ABID97_RS15235 - head completion/stabilization protein, at 3,152,226 to 3,152,696
_RS15235
Position (kb)
3150
3151
3152 Strain fitness (log2 ratio)
-1
0
1 at 3150.088 kb on + strand, within ABID97_RS15205 at 3150.089 kb on - strand, within ABID97_RS15205 at 3150.094 kb on + strand, within ABID97_RS15205 at 3150.266 kb on + strand at 3150.266 kb on + strand at 3150.956 kb on - strand, within ABID97_RS15215 at 3152.055 kb on + strand, within ABID97_RS15230
Per-strain Table
Position Strand Gene LocusTag Fraction Adenine (C) remove 3,150,088 + ABID97_RS15205 0.72 +1.6 3,150,089 - ABID97_RS15205 0.72 -0.3 3,150,094 + ABID97_RS15205 0.73 -0.5 3,150,266 + -0.6 3,150,266 + -0.0 3,150,956 - ABID97_RS15215 0.37 +0.3 3,152,055 + ABID97_RS15230 0.16 -0.2
Or see this region's nucleotide sequence