Strain Fitness in Variovorax sp. OAS795 around ABID97_RS13775

Experiment: Adenine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS13765 and ABID97_RS13770 are separated by 55 nucleotidesABID97_RS13770 and ABID97_RS13775 overlap by 10 nucleotidesABID97_RS13775 and ABID97_RS13780 are separated by 112 nucleotidesABID97_RS13780 and ABID97_RS13785 overlap by 4 nucleotides ABID97_RS13765: ABID97_RS13765 - phage regulatory CII family protein, at 2,858,417 to 2,858,947 _RS13765 ABID97_RS13770: ABID97_RS13770 - helix-turn-helix domain-containing protein, at 2,859,003 to 2,859,926 _RS13770 ABID97_RS13775: ABID97_RS13775 - hypothetical protein, at 2,859,917 to 2,860,702 _RS13775 ABID97_RS13780: ABID97_RS13780 - hypothetical protein, at 2,860,815 to 2,861,327 _RS13780 ABID97_RS13785: ABID97_RS13785 - terminase gpA endonuclease subunit, at 2,861,324 to 2,863,444 _RS13785 Position (kb) 2859 2860 2861Strain fitness (log2 ratio) -1 0 1at 2859.152 kb on - strand, within ABID97_RS13770at 2859.238 kb on - strand, within ABID97_RS13770at 2859.320 kb on + strand, within ABID97_RS13770at 2859.420 kb on - strand, within ABID97_RS13770at 2859.443 kb on + strand, within ABID97_RS13770at 2859.444 kb on - strand, within ABID97_RS13770at 2859.444 kb on - strand, within ABID97_RS13770at 2859.482 kb on + strand, within ABID97_RS13770at 2859.645 kb on - strand, within ABID97_RS13770at 2859.862 kb on - strandat 2859.862 kb on - strandat 2860.113 kb on - strand, within ABID97_RS13775at 2860.373 kb on + strand, within ABID97_RS13775at 2861.441 kb on + strandat 2861.442 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenine (C)
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2,859,152 - ABID97_RS13770 0.16 -0.5
2,859,238 - ABID97_RS13770 0.25 +1.3
2,859,320 + ABID97_RS13770 0.34 -0.2
2,859,420 - ABID97_RS13770 0.45 +1.3
2,859,443 + ABID97_RS13770 0.48 -0.0
2,859,444 - ABID97_RS13770 0.48 -0.5
2,859,444 - ABID97_RS13770 0.48 +0.1
2,859,482 + ABID97_RS13770 0.52 -0.4
2,859,645 - ABID97_RS13770 0.69 +0.2
2,859,862 - -0.4
2,859,862 - -1.1
2,860,113 - ABID97_RS13775 0.25 +0.3
2,860,373 + ABID97_RS13775 0.58 -1.7
2,861,441 + -0.1
2,861,442 - -0.6

Or see this region's nucleotide sequence