Experiment: Adenine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS13765 and ABID97_RS13770 are separated by 55 nucleotides ABID97_RS13770 and ABID97_RS13775 overlap by 10 nucleotides ABID97_RS13775 and ABID97_RS13780 are separated by 112 nucleotides ABID97_RS13780 and ABID97_RS13785 overlap by 4 nucleotides
ABID97_RS13765: ABID97_RS13765 - phage regulatory CII family protein, at 2,858,417 to 2,858,947
_RS13765
ABID97_RS13770: ABID97_RS13770 - helix-turn-helix domain-containing protein, at 2,859,003 to 2,859,926
_RS13770
ABID97_RS13775: ABID97_RS13775 - hypothetical protein, at 2,859,917 to 2,860,702
_RS13775
ABID97_RS13780: ABID97_RS13780 - hypothetical protein, at 2,860,815 to 2,861,327
_RS13780
ABID97_RS13785: ABID97_RS13785 - terminase gpA endonuclease subunit, at 2,861,324 to 2,863,444
_RS13785
Position (kb)
2859
2860
2861 Strain fitness (log2 ratio)
-1
0
1 at 2859.152 kb on - strand, within ABID97_RS13770 at 2859.238 kb on - strand, within ABID97_RS13770 at 2859.320 kb on + strand, within ABID97_RS13770 at 2859.420 kb on - strand, within ABID97_RS13770 at 2859.443 kb on + strand, within ABID97_RS13770 at 2859.444 kb on - strand, within ABID97_RS13770 at 2859.444 kb on - strand, within ABID97_RS13770 at 2859.482 kb on + strand, within ABID97_RS13770 at 2859.645 kb on - strand, within ABID97_RS13770 at 2859.862 kb on - strand at 2859.862 kb on - strand at 2860.113 kb on - strand, within ABID97_RS13775 at 2860.373 kb on + strand, within ABID97_RS13775 at 2861.441 kb on + strand at 2861.442 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Adenine (C) remove 2,859,152 - ABID97_RS13770 0.16 -0.5 2,859,238 - ABID97_RS13770 0.25 +1.3 2,859,320 + ABID97_RS13770 0.34 -0.2 2,859,420 - ABID97_RS13770 0.45 +1.3 2,859,443 + ABID97_RS13770 0.48 -0.0 2,859,444 - ABID97_RS13770 0.48 -0.5 2,859,444 - ABID97_RS13770 0.48 +0.1 2,859,482 + ABID97_RS13770 0.52 -0.4 2,859,645 - ABID97_RS13770 0.69 +0.2 2,859,862 - -0.4 2,859,862 - -1.1 2,860,113 - ABID97_RS13775 0.25 +0.3 2,860,373 + ABID97_RS13775 0.58 -1.7 2,861,441 + -0.1 2,861,442 - -0.6
Or see this region's nucleotide sequence