Strain Fitness in Variovorax sp. OAS795 around ABID97_RS13695

Experiment: Adenine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS13685 and ABID97_RS13690 are separated by 322 nucleotidesABID97_RS13690 and ABID97_RS13695 are separated by 18 nucleotidesABID97_RS13695 and ABID97_RS13700 are separated by 862 nucleotides ABID97_RS13685: ABID97_RS13685 - hydrogenase small subunit, at 2,848,346 to 2,849,437 _RS13685 ABID97_RS13690: ABID97_RS13690 - hypothetical protein, at 2,849,760 to 2,849,978 _RS13690 ABID97_RS13695: ABID97_RS13695 - hypothetical protein, at 2,849,997 to 2,850,314 _RS13695 ABID97_RS13700: ABID97_RS13700 - hypothetical protein, at 2,851,177 to 2,851,899 _RS13700 Position (kb) 2849 2850 2851Strain fitness (log2 ratio) -1 0 1at 2849.100 kb on + strand, within ABID97_RS13685at 2849.101 kb on - strand, within ABID97_RS13685at 2849.101 kb on - strand, within ABID97_RS13685at 2849.101 kb on - strand, within ABID97_RS13685at 2849.112 kb on + strand, within ABID97_RS13685at 2849.113 kb on - strand, within ABID97_RS13685at 2849.377 kb on - strandat 2849.809 kb on + strand, within ABID97_RS13690at 2849.996 kb on + strandat 2850.123 kb on + strand, within ABID97_RS13695at 2850.123 kb on + strand, within ABID97_RS13695at 2850.124 kb on - strand, within ABID97_RS13695at 2850.539 kb on + strandat 2850.596 kb on - strandat 2850.596 kb on - strandat 2850.664 kb on + strandat 2850.665 kb on - strandat 2850.672 kb on - strandat 2850.702 kb on - strandat 2850.777 kb on - strandat 2850.811 kb on + strandat 2850.822 kb on - strandat 2850.858 kb on + strandat 2850.913 kb on + strandat 2851.076 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenine (C)
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2,849,100 + ABID97_RS13685 0.69 -0.8
2,849,101 - ABID97_RS13685 0.69 -1.2
2,849,101 - ABID97_RS13685 0.69 +1.6
2,849,101 - ABID97_RS13685 0.69 -0.9
2,849,112 + ABID97_RS13685 0.70 -0.1
2,849,113 - ABID97_RS13685 0.70 +0.2
2,849,377 - +0.1
2,849,809 + ABID97_RS13690 0.22 +0.5
2,849,996 + +0.4
2,850,123 + ABID97_RS13695 0.40 -0.3
2,850,123 + ABID97_RS13695 0.40 +0.1
2,850,124 - ABID97_RS13695 0.40 +0.2
2,850,539 + +0.3
2,850,596 - +1.0
2,850,596 - +0.3
2,850,664 + -0.6
2,850,665 - -0.0
2,850,672 - -0.4
2,850,702 - +0.1
2,850,777 - -0.2
2,850,811 + +0.1
2,850,822 - +0.0
2,850,858 + -0.2
2,850,913 + +0.2
2,851,076 + +0.1

Or see this region's nucleotide sequence