Strain Fitness in Variovorax sp. OAS795 around ABID97_RS13510

Experiment: Adenine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS13505 and ABID97_RS13510 are separated by 11 nucleotidesABID97_RS13510 and ABID97_RS13515 overlap by 4 nucleotides ABID97_RS13505: ABID97_RS13505 - ornithine cyclodeaminase family protein, at 2,809,745 to 2,810,788 _RS13505 ABID97_RS13510: ABID97_RS13510 - NAD-dependent succinate-semialdehyde dehydrogenase, at 2,810,800 to 2,812,275 _RS13510 ABID97_RS13515: ABID97_RS13515 - MMPL family transporter, at 2,812,272 to 2,814,680 _RS13515 Position (kb) 2810 2811 2812 2813Strain fitness (log2 ratio) -1 0 1at 2809.868 kb on + strand, within ABID97_RS13505at 2809.979 kb on + strand, within ABID97_RS13505at 2809.979 kb on + strand, within ABID97_RS13505at 2810.206 kb on + strand, within ABID97_RS13505at 2810.206 kb on + strand, within ABID97_RS13505at 2810.207 kb on - strand, within ABID97_RS13505at 2810.666 kb on + strand, within ABID97_RS13505at 2810.887 kb on + strandat 2811.043 kb on + strand, within ABID97_RS13510at 2812.057 kb on + strand, within ABID97_RS13510at 2812.585 kb on + strand, within ABID97_RS13515at 2812.586 kb on - strand, within ABID97_RS13515at 2812.953 kb on + strand, within ABID97_RS13515at 2812.957 kb on + strand, within ABID97_RS13515at 2812.958 kb on - strand, within ABID97_RS13515at 2813.112 kb on - strand, within ABID97_RS13515

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenine (C)
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2,809,868 + ABID97_RS13505 0.12 +1.1
2,809,979 + ABID97_RS13505 0.22 +0.5
2,809,979 + ABID97_RS13505 0.22 +0.4
2,810,206 + ABID97_RS13505 0.44 +1.0
2,810,206 + ABID97_RS13505 0.44 +0.2
2,810,207 - ABID97_RS13505 0.44 -0.3
2,810,666 + ABID97_RS13505 0.88 -0.5
2,810,887 + -0.3
2,811,043 + ABID97_RS13510 0.16 +0.4
2,812,057 + ABID97_RS13510 0.85 -0.2
2,812,585 + ABID97_RS13515 0.13 -1.0
2,812,586 - ABID97_RS13515 0.13 -0.5
2,812,953 + ABID97_RS13515 0.28 -0.4
2,812,957 + ABID97_RS13515 0.28 -0.9
2,812,958 - ABID97_RS13515 0.28 +0.7
2,813,112 - ABID97_RS13515 0.35 +0.1

Or see this region's nucleotide sequence