Strain Fitness in Variovorax sp. OAS795 around ABID97_RS12845

Experiment: Adenine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS12840 and ABID97_RS12845 are separated by 129 nucleotidesABID97_RS12845 and ABID97_RS12850 are separated by 42 nucleotidesABID97_RS12850 and ABID97_RS12855 are separated by 35 nucleotides ABID97_RS12840: ABID97_RS12840 - LysR family transcriptional regulator, at 2,661,125 to 2,662,102 _RS12840 ABID97_RS12845: ABID97_RS12845 - form I ribulose bisphosphate carboxylase large subunit, at 2,662,232 to 2,663,689 _RS12845 ABID97_RS12850: ABID97_RS12850 - ribulose bisphosphate carboxylase small subunit, at 2,663,732 to 2,664,151 _RS12850 ABID97_RS12855: ABID97_RS12855 - CbbX protein, at 2,664,187 to 2,665,101 _RS12855 Position (kb) 2662 2663 2664Strain fitness (log2 ratio) -1 0 1at 2662.322 kb on + strandat 2662.475 kb on + strand, within ABID97_RS12845at 2662.490 kb on + strand, within ABID97_RS12845at 2662.806 kb on - strand, within ABID97_RS12845at 2663.135 kb on + strand, within ABID97_RS12845at 2663.136 kb on - strand, within ABID97_RS12845at 2663.267 kb on + strand, within ABID97_RS12845at 2663.271 kb on - strand, within ABID97_RS12845at 2663.322 kb on - strand, within ABID97_RS12845at 2663.653 kb on + strandat 2663.664 kb on - strandat 2663.840 kb on + strand, within ABID97_RS12850at 2663.966 kb on + strand, within ABID97_RS12850at 2663.967 kb on - strand, within ABID97_RS12850at 2664.114 kb on - strandat 2664.616 kb on + strand, within ABID97_RS12855

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenine (C)
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2,662,322 + -0.2
2,662,475 + ABID97_RS12845 0.17 +0.1
2,662,490 + ABID97_RS12845 0.18 +1.0
2,662,806 - ABID97_RS12845 0.39 +0.3
2,663,135 + ABID97_RS12845 0.62 -0.1
2,663,136 - ABID97_RS12845 0.62 -0.6
2,663,267 + ABID97_RS12845 0.71 +0.4
2,663,271 - ABID97_RS12845 0.71 +1.1
2,663,322 - ABID97_RS12845 0.75 +0.5
2,663,653 + -1.0
2,663,664 - +0.5
2,663,840 + ABID97_RS12850 0.26 -0.1
2,663,966 + ABID97_RS12850 0.56 +0.4
2,663,967 - ABID97_RS12850 0.56 -1.4
2,664,114 - -0.3
2,664,616 + ABID97_RS12855 0.47 -0.1

Or see this region's nucleotide sequence