Strain Fitness in Variovorax sp. OAS795 around ABID97_RS12025

Experiment: Adenine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS12020 and ABID97_RS12025 are separated by 89 nucleotidesABID97_RS12025 and ABID97_RS12030 are separated by 265 nucleotides ABID97_RS12020: ABID97_RS12020 - polysaccharide pyruvyl transferase family protein, at 2,481,486 to 2,482,634 _RS12020 ABID97_RS12025: ABID97_RS12025 - OBAP family protein, at 2,482,724 to 2,483,512 _RS12025 ABID97_RS12030: ABID97_RS12030 - CheR family methyltransferase, at 2,483,778 to 2,487,920 _RS12030 Position (kb) 2482 2483 2484Strain fitness (log2 ratio) -1 0 1at 2482.387 kb on + strand, within ABID97_RS12020at 2482.553 kb on - strandat 2482.726 kb on - strandat 2482.800 kb on - strandat 2483.028 kb on + strand, within ABID97_RS12025at 2483.075 kb on + strand, within ABID97_RS12025at 2483.182 kb on - strand, within ABID97_RS12025at 2484.063 kb on + strandat 2484.063 kb on + strandat 2484.064 kb on - strandat 2484.064 kb on - strandat 2484.064 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenine (C)
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2,482,387 + ABID97_RS12020 0.78 -1.4
2,482,553 - -0.2
2,482,726 - -0.0
2,482,800 - -0.7
2,483,028 + ABID97_RS12025 0.39 +0.5
2,483,075 + ABID97_RS12025 0.44 -1.0
2,483,182 - ABID97_RS12025 0.58 -0.9
2,484,063 + +0.3
2,484,063 + +0.4
2,484,064 - -1.1
2,484,064 - +0.1
2,484,064 - +1.1

Or see this region's nucleotide sequence