Experiment: Adenine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS12015 and ABID97_RS12020 overlap by 8 nucleotides ABID97_RS12020 and ABID97_RS12025 are separated by 89 nucleotides
ABID97_RS12015: ABID97_RS12015 - Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C-terminal domain, at 2,480,067 to 2,481,493
_RS12015
ABID97_RS12020: ABID97_RS12020 - polysaccharide pyruvyl transferase family protein, at 2,481,486 to 2,482,634
_RS12020
ABID97_RS12025: ABID97_RS12025 - OBAP family protein, at 2,482,724 to 2,483,512
_RS12025
Position (kb)
2481
2482
2483 Strain fitness (log2 ratio)
-1
0
1 at 2480.682 kb on + strand, within ABID97_RS12015 at 2481.159 kb on + strand, within ABID97_RS12015 at 2481.159 kb on + strand, within ABID97_RS12015 at 2481.159 kb on + strand, within ABID97_RS12015 at 2481.160 kb on - strand, within ABID97_RS12015 at 2481.160 kb on - strand, within ABID97_RS12015 at 2481.160 kb on - strand, within ABID97_RS12015 at 2481.160 kb on - strand, within ABID97_RS12015 at 2481.547 kb on + strand at 2481.548 kb on - strand at 2482.387 kb on + strand, within ABID97_RS12020 at 2482.553 kb on - strand at 2482.726 kb on - strand at 2482.800 kb on - strand at 2483.028 kb on + strand, within ABID97_RS12025 at 2483.075 kb on + strand, within ABID97_RS12025 at 2483.182 kb on - strand, within ABID97_RS12025
Per-strain Table
Position Strand Gene LocusTag Fraction Adenine (C) remove 2,480,682 + ABID97_RS12015 0.43 -0.4 2,481,159 + ABID97_RS12015 0.77 -0.0 2,481,159 + ABID97_RS12015 0.77 +0.5 2,481,159 + ABID97_RS12015 0.77 -0.0 2,481,160 - ABID97_RS12015 0.77 +0.1 2,481,160 - ABID97_RS12015 0.77 -0.6 2,481,160 - ABID97_RS12015 0.77 +0.4 2,481,160 - ABID97_RS12015 0.77 -0.7 2,481,547 + +0.3 2,481,548 - +0.3 2,482,387 + ABID97_RS12020 0.78 -1.4 2,482,553 - -0.2 2,482,726 - -0.0 2,482,800 - -0.7 2,483,028 + ABID97_RS12025 0.39 +0.5 2,483,075 + ABID97_RS12025 0.44 -1.0 2,483,182 - ABID97_RS12025 0.58 -0.9
Or see this region's nucleotide sequence