Strain Fitness in Variovorax sp. OAS795 around ABID97_RS11060

Experiment: Adenine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS11055 and ABID97_RS11060 are separated by 11 nucleotidesABID97_RS11060 and ABID97_RS11065 are separated by 10 nucleotides ABID97_RS11055: ABID97_RS11055 - sugar phosphate isomerase/epimerase family protein, at 2,287,194 to 2,288,072 _RS11055 ABID97_RS11060: ABID97_RS11060 - dihydrodipicolinate synthase family protein, at 2,288,084 to 2,289,271 _RS11060 ABID97_RS11065: ABID97_RS11065 - Gfo/Idh/MocA family oxidoreductase, at 2,289,282 to 2,290,445 _RS11065 Position (kb) 2288 2289 2290Strain fitness (log2 ratio) -1 0 1at 2287.144 kb on + strandat 2287.195 kb on + strandat 2287.196 kb on - strandat 2287.221 kb on - strandat 2287.414 kb on + strand, within ABID97_RS11055at 2287.483 kb on + strand, within ABID97_RS11055at 2287.483 kb on + strand, within ABID97_RS11055at 2287.484 kb on - strand, within ABID97_RS11055at 2287.484 kb on - strand, within ABID97_RS11055at 2287.484 kb on - strand, within ABID97_RS11055at 2287.484 kb on - strand, within ABID97_RS11055at 2287.700 kb on - strand, within ABID97_RS11055at 2288.286 kb on + strand, within ABID97_RS11060at 2288.287 kb on - strand, within ABID97_RS11060at 2288.493 kb on + strand, within ABID97_RS11060at 2288.494 kb on - strand, within ABID97_RS11060at 2288.515 kb on - strand, within ABID97_RS11060at 2289.389 kb on - strandat 2289.733 kb on + strand, within ABID97_RS11065

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenine (C)
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2,287,144 + +0.7
2,287,195 + -0.1
2,287,196 - +1.1
2,287,221 - +0.1
2,287,414 + ABID97_RS11055 0.25 -0.4
2,287,483 + ABID97_RS11055 0.33 -0.4
2,287,483 + ABID97_RS11055 0.33 -0.6
2,287,484 - ABID97_RS11055 0.33 +0.7
2,287,484 - ABID97_RS11055 0.33 +0.6
2,287,484 - ABID97_RS11055 0.33 -0.6
2,287,484 - ABID97_RS11055 0.33 +0.2
2,287,700 - ABID97_RS11055 0.58 +0.6
2,288,286 + ABID97_RS11060 0.17 -0.2
2,288,287 - ABID97_RS11060 0.17 +0.0
2,288,493 + ABID97_RS11060 0.34 +0.5
2,288,494 - ABID97_RS11060 0.35 +0.1
2,288,515 - ABID97_RS11060 0.36 +0.6
2,289,389 - +0.0
2,289,733 + ABID97_RS11065 0.39 +0.4

Or see this region's nucleotide sequence