Strain Fitness in Variovorax sp. OAS795 around ABID97_RS10920

Experiment: Adenine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS10915 and ABID97_RS10920 are separated by 251 nucleotidesABID97_RS10920 and ABID97_RS10925 are separated by 40 nucleotides ABID97_RS10915: ABID97_RS10915 - 4-hydroxy-tetrahydrodipicolinate synthase, at 2,260,126 to 2,261,022 _RS10915 ABID97_RS10920: ABID97_RS10920 - molybdenum cofactor biosynthesis protein MoaE, at 2,261,274 to 2,261,750 _RS10920 ABID97_RS10925: ABID97_RS10925 - Bug family tripartite tricarboxylate transporter substrate binding protein, at 2,261,791 to 2,262,783 _RS10925 Position (kb) 2261 2262Strain fitness (log2 ratio) -3 -2 -1 0 1at 2260.598 kb on + strand, within ABID97_RS10915at 2260.598 kb on + strand, within ABID97_RS10915at 2260.676 kb on + strand, within ABID97_RS10915at 2260.676 kb on + strand, within ABID97_RS10915at 2260.676 kb on + strand, within ABID97_RS10915at 2260.677 kb on - strand, within ABID97_RS10915at 2260.677 kb on - strand, within ABID97_RS10915at 2260.677 kb on - strand, within ABID97_RS10915at 2261.207 kb on + strandat 2261.208 kb on - strandat 2261.208 kb on - strandat 2261.626 kb on - strand, within ABID97_RS10920at 2261.626 kb on - strand, within ABID97_RS10920at 2261.843 kb on + strandat 2261.843 kb on + strandat 2261.843 kb on + strandat 2261.843 kb on + strandat 2261.843 kb on + strandat 2261.844 kb on - strandat 2261.960 kb on + strand, within ABID97_RS10925at 2262.009 kb on - strand, within ABID97_RS10925at 2262.011 kb on + strand, within ABID97_RS10925at 2262.011 kb on + strand, within ABID97_RS10925at 2262.012 kb on - strand, within ABID97_RS10925at 2262.212 kb on + strand, within ABID97_RS10925at 2262.342 kb on - strand, within ABID97_RS10925at 2262.721 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenine (C)
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2,260,598 + ABID97_RS10915 0.53 +1.7
2,260,598 + ABID97_RS10915 0.53 +0.1
2,260,676 + ABID97_RS10915 0.61 -1.6
2,260,676 + ABID97_RS10915 0.61 +0.1
2,260,676 + ABID97_RS10915 0.61 +0.4
2,260,677 - ABID97_RS10915 0.61 -0.5
2,260,677 - ABID97_RS10915 0.61 -0.4
2,260,677 - ABID97_RS10915 0.61 +0.3
2,261,207 + +0.4
2,261,208 - -0.4
2,261,208 - +0.2
2,261,626 - ABID97_RS10920 0.74 -0.8
2,261,626 - ABID97_RS10920 0.74 -3.1
2,261,843 + +0.9
2,261,843 + +0.6
2,261,843 + +0.1
2,261,843 + -0.2
2,261,843 + +0.4
2,261,844 - +0.2
2,261,960 + ABID97_RS10925 0.17 +0.4
2,262,009 - ABID97_RS10925 0.22 +0.3
2,262,011 + ABID97_RS10925 0.22 -0.2
2,262,011 + ABID97_RS10925 0.22 +0.4
2,262,012 - ABID97_RS10925 0.22 +0.5
2,262,212 + ABID97_RS10925 0.42 +0.3
2,262,342 - ABID97_RS10925 0.55 -0.3
2,262,721 + +0.0

Or see this region's nucleotide sequence