Strain Fitness in Variovorax sp. OAS795 around ABID97_RS10900

Experiment: Adenine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS10895 and ABID97_RS10900 are separated by 89 nucleotidesABID97_RS10900 and ABID97_RS10905 overlap by 8 nucleotides ABID97_RS10895: ABID97_RS10895 - threonine synthase, at 2,256,558 to 2,257,973 _RS10895 ABID97_RS10900: ABID97_RS10900 - molybdopterin-guanine dinucleotide biosynthesis protein B, at 2,258,063 to 2,258,608 _RS10900 ABID97_RS10905: ABID97_RS10905 - gephyrin-like molybdotransferase Glp, at 2,258,601 to 2,259,878 _RS10905 Position (kb) 2258 2259Strain fitness (log2 ratio) -3 -2 -1 0 1at 2258.025 kb on + strandat 2258.026 kb on - strandat 2258.026 kb on - strandat 2258.216 kb on + strand, within ABID97_RS10900at 2258.216 kb on + strand, within ABID97_RS10900at 2258.216 kb on + strand, within ABID97_RS10900at 2258.216 kb on + strand, within ABID97_RS10900at 2258.585 kb on + strandat 2258.585 kb on + strandat 2258.586 kb on - strandat 2258.586 kb on - strandat 2258.586 kb on - strandat 2259.246 kb on + strand, within ABID97_RS10905at 2259.247 kb on - strand, within ABID97_RS10905at 2259.247 kb on - strand, within ABID97_RS10905at 2259.499 kb on - strand, within ABID97_RS10905

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenine (C)
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2,258,025 + -1.6
2,258,026 - +0.3
2,258,026 - -0.3
2,258,216 + ABID97_RS10900 0.28 -1.1
2,258,216 + ABID97_RS10900 0.28 +0.0
2,258,216 + ABID97_RS10900 0.28 -0.3
2,258,216 + ABID97_RS10900 0.28 -0.3
2,258,585 + +0.2
2,258,585 + -0.6
2,258,586 - -0.5
2,258,586 - -0.8
2,258,586 - -0.5
2,259,246 + ABID97_RS10905 0.50 -2.9
2,259,247 - ABID97_RS10905 0.51 -3.4
2,259,247 - ABID97_RS10905 0.51 -2.6
2,259,499 - ABID97_RS10905 0.70 -1.8

Or see this region's nucleotide sequence