Strain Fitness in Variovorax sp. OAS795 around ABID97_RS10150

Experiment: Adenine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS10145 and ABID97_RS10150 are separated by 42 nucleotidesABID97_RS10150 and ABID97_RS10155 are separated by 12 nucleotidesABID97_RS10155 and ABID97_RS10160 are separated by 59 nucleotides ABID97_RS10145: ABID97_RS10145 - SRPBCC domain-containing protein, at 2,106,152 to 2,107,198 _RS10145 ABID97_RS10150: ABID97_RS10150 - methyltransferase domain-containing protein, at 2,107,241 to 2,108,206 _RS10150 ABID97_RS10155: ABID97_RS10155 - DUF393 domain-containing protein, at 2,108,219 to 2,108,641 _RS10155 ABID97_RS10160: ABID97_RS10160 - MarR family transcriptional regulator, at 2,108,701 to 2,109,288 _RS10160 Position (kb) 2107 2108 2109Strain fitness (log2 ratio) -1 0 1 2at 2106.249 kb on + strandat 2106.328 kb on - strand, within ABID97_RS10145at 2106.351 kb on + strand, within ABID97_RS10145at 2106.351 kb on + strand, within ABID97_RS10145at 2106.352 kb on - strand, within ABID97_RS10145at 2106.352 kb on - strand, within ABID97_RS10145at 2106.352 kb on - strand, within ABID97_RS10145at 2106.858 kb on + strand, within ABID97_RS10145at 2106.858 kb on + strand, within ABID97_RS10145at 2106.916 kb on - strand, within ABID97_RS10145at 2106.916 kb on - strand, within ABID97_RS10145at 2106.918 kb on + strand, within ABID97_RS10145at 2106.919 kb on - strand, within ABID97_RS10145at 2106.954 kb on + strand, within ABID97_RS10145at 2106.954 kb on + strand, within ABID97_RS10145at 2106.954 kb on + strand, within ABID97_RS10145at 2106.955 kb on - strand, within ABID97_RS10145at 2106.955 kb on - strand, within ABID97_RS10145at 2107.273 kb on - strandat 2107.314 kb on + strandat 2107.314 kb on + strandat 2107.839 kb on + strand, within ABID97_RS10150at 2107.839 kb on + strand, within ABID97_RS10150at 2107.840 kb on - strand, within ABID97_RS10150at 2107.840 kb on - strand, within ABID97_RS10150at 2108.049 kb on + strand, within ABID97_RS10150at 2108.049 kb on + strand, within ABID97_RS10150at 2108.049 kb on + strand, within ABID97_RS10150at 2108.050 kb on - strand, within ABID97_RS10150at 2108.050 kb on - strand, within ABID97_RS10150at 2108.095 kb on - strand, within ABID97_RS10150at 2108.095 kb on - strand, within ABID97_RS10150

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenine (C)
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2,106,249 + -0.7
2,106,328 - ABID97_RS10145 0.17 +0.3
2,106,351 + ABID97_RS10145 0.19 +0.0
2,106,351 + ABID97_RS10145 0.19 +0.5
2,106,352 - ABID97_RS10145 0.19 +0.5
2,106,352 - ABID97_RS10145 0.19 -0.4
2,106,352 - ABID97_RS10145 0.19 +0.3
2,106,858 + ABID97_RS10145 0.67 +0.1
2,106,858 + ABID97_RS10145 0.67 +1.6
2,106,916 - ABID97_RS10145 0.73 -0.4
2,106,916 - ABID97_RS10145 0.73 +0.0
2,106,918 + ABID97_RS10145 0.73 +0.2
2,106,919 - ABID97_RS10145 0.73 +0.8
2,106,954 + ABID97_RS10145 0.77 +0.0
2,106,954 + ABID97_RS10145 0.77 -0.1
2,106,954 + ABID97_RS10145 0.77 +1.6
2,106,955 - ABID97_RS10145 0.77 -0.7
2,106,955 - ABID97_RS10145 0.77 -0.1
2,107,273 - +0.1
2,107,314 + -0.2
2,107,314 + +0.0
2,107,839 + ABID97_RS10150 0.62 -1.4
2,107,839 + ABID97_RS10150 0.62 -0.4
2,107,840 - ABID97_RS10150 0.62 +0.7
2,107,840 - ABID97_RS10150 0.62 +1.9
2,108,049 + ABID97_RS10150 0.84 -0.2
2,108,049 + ABID97_RS10150 0.84 +0.7
2,108,049 + ABID97_RS10150 0.84 +2.1
2,108,050 - ABID97_RS10150 0.84 +0.8
2,108,050 - ABID97_RS10150 0.84 -0.1
2,108,095 - ABID97_RS10150 0.88 +0.6
2,108,095 - ABID97_RS10150 0.88 +0.6

Or see this region's nucleotide sequence