Experiment: Adenine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS09105 and ABID97_RS09110 are separated by 8 nucleotides ABID97_RS09110 and ABID97_RS09115 are separated by 12 nucleotides ABID97_RS09115 and ABID97_RS09120 are separated by 18 nucleotides
ABID97_RS09105: ABID97_RS09105 - CpaF family protein, at 1,910,141 to 1,911,514
_RS09105
ABID97_RS09110: ABID97_RS09110 - type II secretion system F family protein, at 1,911,523 to 1,912,515
_RS09110
ABID97_RS09115: ABID97_RS09115 - type II secretion system F family protein, at 1,912,528 to 1,913,433
_RS09115
ABID97_RS09120: ABID97_RS09120 - response regulator transcription factor, at 1,913,452 to 1,914,147
_RS09120
Position (kb)
1911
1912
1913 Strain fitness (log2 ratio)
-1
0
1 at 1911.512 kb on + strand at 1911.607 kb on + strand at 1911.607 kb on + strand at 1911.608 kb on - strand at 1911.625 kb on + strand, within ABID97_RS09110 at 1911.949 kb on + strand, within ABID97_RS09110 at 1911.949 kb on + strand, within ABID97_RS09110 at 1912.450 kb on + strand at 1912.451 kb on - strand at 1913.495 kb on + strand at 1913.496 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Adenine (C) remove 1,911,512 + -0.1 1,911,607 + +0.1 1,911,607 + +0.4 1,911,608 - +0.1 1,911,625 + ABID97_RS09110 0.10 +0.4 1,911,949 + ABID97_RS09110 0.43 -0.3 1,911,949 + ABID97_RS09110 0.43 +0.3 1,912,450 + +0.8 1,912,451 - -1.2 1,913,495 + +0.5 1,913,496 - +0.2
Or see this region's nucleotide sequence