Strain Fitness in Variovorax sp. OAS795 around ABID97_RS09110

Experiment: Adenine (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABID97_RS09105 and ABID97_RS09110 are separated by 8 nucleotidesABID97_RS09110 and ABID97_RS09115 are separated by 12 nucleotidesABID97_RS09115 and ABID97_RS09120 are separated by 18 nucleotides ABID97_RS09105: ABID97_RS09105 - CpaF family protein, at 1,910,141 to 1,911,514 _RS09105 ABID97_RS09110: ABID97_RS09110 - type II secretion system F family protein, at 1,911,523 to 1,912,515 _RS09110 ABID97_RS09115: ABID97_RS09115 - type II secretion system F family protein, at 1,912,528 to 1,913,433 _RS09115 ABID97_RS09120: ABID97_RS09120 - response regulator transcription factor, at 1,913,452 to 1,914,147 _RS09120 Position (kb) 1911 1912 1913Strain fitness (log2 ratio) -1 0 1at 1911.512 kb on + strandat 1911.607 kb on + strandat 1911.607 kb on + strandat 1911.608 kb on - strandat 1911.625 kb on + strand, within ABID97_RS09110at 1911.949 kb on + strand, within ABID97_RS09110at 1911.949 kb on + strand, within ABID97_RS09110at 1912.450 kb on + strandat 1912.451 kb on - strandat 1913.495 kb on + strandat 1913.496 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Adenine (C)
remove
1,911,512 + -0.1
1,911,607 + +0.1
1,911,607 + +0.4
1,911,608 - +0.1
1,911,625 + ABID97_RS09110 0.10 +0.4
1,911,949 + ABID97_RS09110 0.43 -0.3
1,911,949 + ABID97_RS09110 0.43 +0.3
1,912,450 + +0.8
1,912,451 - -1.2
1,913,495 + +0.5
1,913,496 - +0.2

Or see this region's nucleotide sequence