Strain Fitness in Variovorax sp. OAS795 around ABID97_RS08635

Experiment: Adenine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS08625 and ABID97_RS08630 are separated by 22 nucleotidesABID97_RS08630 and ABID97_RS08635 overlap by 4 nucleotidesABID97_RS08635 and ABID97_RS08640 are separated by 161 nucleotidesABID97_RS08640 and ABID97_RS08645 are separated by 133 nucleotides ABID97_RS08625: ABID97_RS08625 - S9 family peptidase, at 1,810,898 to 1,812,850 _RS08625 ABID97_RS08630: ABID97_RS08630 - ornithine carbamoyltransferase, at 1,812,873 to 1,813,808 _RS08630 ABID97_RS08635: ABID97_RS08635 - aspartate aminotransferase family protein, at 1,813,805 to 1,815,013 _RS08635 ABID97_RS08640: ABID97_RS08640 - DUF3579 domain-containing protein, at 1,815,175 to 1,815,507 _RS08640 ABID97_RS08645: ABID97_RS08645 - 30S ribosomal protein S20, at 1,815,641 to 1,815,955 _RS08645 Position (kb) 1813 1814 1815 1816Strain fitness (log2 ratio) -1 0 1at 1812.821 kb on + strandat 1812.822 kb on - strandat 1812.824 kb on + strandat 1812.824 kb on + strandat 1812.824 kb on + strandat 1812.824 kb on + strandat 1812.825 kb on - strandat 1812.825 kb on - strandat 1812.875 kb on - strandat 1815.045 kb on + strandat 1815.125 kb on + strandat 1815.126 kb on - strandat 1815.301 kb on + strand, within ABID97_RS08640at 1815.323 kb on - strand, within ABID97_RS08640at 1815.323 kb on - strand, within ABID97_RS08640at 1815.569 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenine (C)
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1,812,821 + +0.1
1,812,822 - +0.1
1,812,824 + +0.4
1,812,824 + -0.9
1,812,824 + +0.1
1,812,824 + +0.8
1,812,825 - -0.1
1,812,825 - +0.1
1,812,875 - -0.1
1,815,045 + +0.3
1,815,125 + -0.1
1,815,126 - -0.1
1,815,301 + ABID97_RS08640 0.38 +0.1
1,815,323 - ABID97_RS08640 0.44 +0.3
1,815,323 - ABID97_RS08640 0.44 -0.1
1,815,569 + +0.1

Or see this region's nucleotide sequence