Strain Fitness in Variovorax sp. OAS795 around ABID97_RS08630

Experiment: Adenine (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABID97_RS08625 and ABID97_RS08630 are separated by 22 nucleotidesABID97_RS08630 and ABID97_RS08635 overlap by 4 nucleotides ABID97_RS08625: ABID97_RS08625 - S9 family peptidase, at 1,810,898 to 1,812,850 _RS08625 ABID97_RS08630: ABID97_RS08630 - ornithine carbamoyltransferase, at 1,812,873 to 1,813,808 _RS08630 ABID97_RS08635: ABID97_RS08635 - aspartate aminotransferase family protein, at 1,813,805 to 1,815,013 _RS08635 Position (kb) 1812 1813 1814Strain fitness (log2 ratio) -1 0 1at 1811.927 kb on + strand, within ABID97_RS08625at 1811.930 kb on + strand, within ABID97_RS08625at 1811.931 kb on - strand, within ABID97_RS08625at 1812.026 kb on + strand, within ABID97_RS08625at 1812.149 kb on + strand, within ABID97_RS08625at 1812.150 kb on - strand, within ABID97_RS08625at 1812.150 kb on - strand, within ABID97_RS08625at 1812.150 kb on - strand, within ABID97_RS08625at 1812.150 kb on - strand, within ABID97_RS08625at 1812.219 kb on - strand, within ABID97_RS08625at 1812.219 kb on - strand, within ABID97_RS08625at 1812.219 kb on - strand, within ABID97_RS08625at 1812.359 kb on + strand, within ABID97_RS08625at 1812.359 kb on + strand, within ABID97_RS08625at 1812.359 kb on + strand, within ABID97_RS08625at 1812.359 kb on + strand, within ABID97_RS08625at 1812.360 kb on - strand, within ABID97_RS08625at 1812.360 kb on - strand, within ABID97_RS08625at 1812.360 kb on - strand, within ABID97_RS08625at 1812.360 kb on - strand, within ABID97_RS08625at 1812.360 kb on - strand, within ABID97_RS08625at 1812.360 kb on - strand, within ABID97_RS08625at 1812.371 kb on + strand, within ABID97_RS08625at 1812.485 kb on + strand, within ABID97_RS08625at 1812.486 kb on - strand, within ABID97_RS08625at 1812.518 kb on + strand, within ABID97_RS08625at 1812.519 kb on - strandat 1812.761 kb on + strandat 1812.761 kb on + strandat 1812.761 kb on + strandat 1812.761 kb on + strandat 1812.821 kb on + strandat 1812.822 kb on - strandat 1812.824 kb on + strandat 1812.824 kb on + strandat 1812.824 kb on + strandat 1812.824 kb on + strandat 1812.825 kb on - strandat 1812.825 kb on - strandat 1812.875 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Adenine (C)
remove
1,811,927 + ABID97_RS08625 0.53 -0.1
1,811,930 + ABID97_RS08625 0.53 +0.3
1,811,931 - ABID97_RS08625 0.53 +0.3
1,812,026 + ABID97_RS08625 0.58 +0.1
1,812,149 + ABID97_RS08625 0.64 -0.5
1,812,150 - ABID97_RS08625 0.64 +0.4
1,812,150 - ABID97_RS08625 0.64 -0.4
1,812,150 - ABID97_RS08625 0.64 +0.6
1,812,150 - ABID97_RS08625 0.64 -0.3
1,812,219 - ABID97_RS08625 0.68 -0.6
1,812,219 - ABID97_RS08625 0.68 -0.2
1,812,219 - ABID97_RS08625 0.68 +0.2
1,812,359 + ABID97_RS08625 0.75 -0.5
1,812,359 + ABID97_RS08625 0.75 +1.1
1,812,359 + ABID97_RS08625 0.75 +0.4
1,812,359 + ABID97_RS08625 0.75 -0.9
1,812,360 - ABID97_RS08625 0.75 -0.7
1,812,360 - ABID97_RS08625 0.75 +0.4
1,812,360 - ABID97_RS08625 0.75 +0.3
1,812,360 - ABID97_RS08625 0.75 +0.1
1,812,360 - ABID97_RS08625 0.75 +0.0
1,812,360 - ABID97_RS08625 0.75 -0.2
1,812,371 + ABID97_RS08625 0.75 +0.3
1,812,485 + ABID97_RS08625 0.81 -0.4
1,812,486 - ABID97_RS08625 0.81 -0.4
1,812,518 + ABID97_RS08625 0.83 +0.2
1,812,519 - +1.4
1,812,761 + +0.2
1,812,761 + -0.0
1,812,761 + -0.1
1,812,761 + -0.3
1,812,821 + +0.1
1,812,822 - +0.1
1,812,824 + +0.4
1,812,824 + -0.9
1,812,824 + +0.1
1,812,824 + +0.8
1,812,825 - -0.1
1,812,825 - +0.1
1,812,875 - -0.1

Or see this region's nucleotide sequence