Experiment: Adenine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS08625 and ABID97_RS08630 are separated by 22 nucleotides ABID97_RS08630 and ABID97_RS08635 overlap by 4 nucleotides
ABID97_RS08625: ABID97_RS08625 - S9 family peptidase, at 1,810,898 to 1,812,850
_RS08625
ABID97_RS08630: ABID97_RS08630 - ornithine carbamoyltransferase, at 1,812,873 to 1,813,808
_RS08630
ABID97_RS08635: ABID97_RS08635 - aspartate aminotransferase family protein, at 1,813,805 to 1,815,013
_RS08635
Position (kb)
1812
1813
1814 Strain fitness (log2 ratio)
-1
0
1 at 1811.927 kb on + strand, within ABID97_RS08625 at 1811.930 kb on + strand, within ABID97_RS08625 at 1811.931 kb on - strand, within ABID97_RS08625 at 1812.026 kb on + strand, within ABID97_RS08625 at 1812.149 kb on + strand, within ABID97_RS08625 at 1812.150 kb on - strand, within ABID97_RS08625 at 1812.150 kb on - strand, within ABID97_RS08625 at 1812.150 kb on - strand, within ABID97_RS08625 at 1812.150 kb on - strand, within ABID97_RS08625 at 1812.219 kb on - strand, within ABID97_RS08625 at 1812.219 kb on - strand, within ABID97_RS08625 at 1812.219 kb on - strand, within ABID97_RS08625 at 1812.359 kb on + strand, within ABID97_RS08625 at 1812.359 kb on + strand, within ABID97_RS08625 at 1812.359 kb on + strand, within ABID97_RS08625 at 1812.359 kb on + strand, within ABID97_RS08625 at 1812.360 kb on - strand, within ABID97_RS08625 at 1812.360 kb on - strand, within ABID97_RS08625 at 1812.360 kb on - strand, within ABID97_RS08625 at 1812.360 kb on - strand, within ABID97_RS08625 at 1812.360 kb on - strand, within ABID97_RS08625 at 1812.360 kb on - strand, within ABID97_RS08625 at 1812.371 kb on + strand, within ABID97_RS08625 at 1812.485 kb on + strand, within ABID97_RS08625 at 1812.486 kb on - strand, within ABID97_RS08625 at 1812.518 kb on + strand, within ABID97_RS08625 at 1812.519 kb on - strand at 1812.761 kb on + strand at 1812.761 kb on + strand at 1812.761 kb on + strand at 1812.761 kb on + strand at 1812.821 kb on + strand at 1812.822 kb on - strand at 1812.824 kb on + strand at 1812.824 kb on + strand at 1812.824 kb on + strand at 1812.824 kb on + strand at 1812.825 kb on - strand at 1812.825 kb on - strand at 1812.875 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Adenine (C) remove 1,811,927 + ABID97_RS08625 0.53 -0.1 1,811,930 + ABID97_RS08625 0.53 +0.3 1,811,931 - ABID97_RS08625 0.53 +0.3 1,812,026 + ABID97_RS08625 0.58 +0.1 1,812,149 + ABID97_RS08625 0.64 -0.5 1,812,150 - ABID97_RS08625 0.64 +0.4 1,812,150 - ABID97_RS08625 0.64 -0.4 1,812,150 - ABID97_RS08625 0.64 +0.6 1,812,150 - ABID97_RS08625 0.64 -0.3 1,812,219 - ABID97_RS08625 0.68 -0.6 1,812,219 - ABID97_RS08625 0.68 -0.2 1,812,219 - ABID97_RS08625 0.68 +0.2 1,812,359 + ABID97_RS08625 0.75 -0.5 1,812,359 + ABID97_RS08625 0.75 +1.1 1,812,359 + ABID97_RS08625 0.75 +0.4 1,812,359 + ABID97_RS08625 0.75 -0.9 1,812,360 - ABID97_RS08625 0.75 -0.7 1,812,360 - ABID97_RS08625 0.75 +0.4 1,812,360 - ABID97_RS08625 0.75 +0.3 1,812,360 - ABID97_RS08625 0.75 +0.1 1,812,360 - ABID97_RS08625 0.75 +0.0 1,812,360 - ABID97_RS08625 0.75 -0.2 1,812,371 + ABID97_RS08625 0.75 +0.3 1,812,485 + ABID97_RS08625 0.81 -0.4 1,812,486 - ABID97_RS08625 0.81 -0.4 1,812,518 + ABID97_RS08625 0.83 +0.2 1,812,519 - +1.4 1,812,761 + +0.2 1,812,761 + -0.0 1,812,761 + -0.1 1,812,761 + -0.3 1,812,821 + +0.1 1,812,822 - +0.1 1,812,824 + +0.4 1,812,824 + -0.9 1,812,824 + +0.1 1,812,824 + +0.8 1,812,825 - -0.1 1,812,825 - +0.1 1,812,875 - -0.1
Or see this region's nucleotide sequence