Strain Fitness in Variovorax sp. OAS795 around ABID97_RS07890

Experiment: Adenine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS07880 and ABID97_RS07885 are separated by 10 nucleotidesABID97_RS07885 and ABID97_RS07890 overlap by 11 nucleotidesABID97_RS07890 and ABID97_RS07895 are separated by 38 nucleotides ABID97_RS07880: ABID97_RS07880 - cysteine synthase CysM, at 1,655,264 to 1,656,166 _RS07880 ABID97_RS07885: ABID97_RS07885 - NUDIX domain-containing protein, at 1,656,177 to 1,656,755 _RS07885 ABID97_RS07890: ABID97_RS07890 - sulfurtransferase TusA family protein, at 1,656,745 to 1,656,972 _RS07890 ABID97_RS07895: ABID97_RS07895 - UTP--glucose-1-phosphate uridylyltransferase GalU, at 1,657,011 to 1,657,901 _RS07895 Position (kb) 1656 1657Strain fitness (log2 ratio) -1 0 1 2at 1656.284 kb on + strand, within ABID97_RS07885at 1656.284 kb on + strand, within ABID97_RS07885at 1656.285 kb on - strand, within ABID97_RS07885at 1656.330 kb on + strand, within ABID97_RS07885at 1656.381 kb on + strand, within ABID97_RS07885at 1656.382 kb on - strand, within ABID97_RS07885at 1656.382 kb on - strand, within ABID97_RS07885at 1656.382 kb on - strand, within ABID97_RS07885at 1656.382 kb on - strand, within ABID97_RS07885at 1656.382 kb on - strand, within ABID97_RS07885at 1656.382 kb on - strand, within ABID97_RS07885at 1656.382 kb on - strand, within ABID97_RS07885at 1656.591 kb on + strand, within ABID97_RS07885at 1656.591 kb on + strand, within ABID97_RS07885at 1656.591 kb on + strand, within ABID97_RS07885at 1656.592 kb on - strand, within ABID97_RS07885

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenine (C)
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1,656,284 + ABID97_RS07885 0.18 +0.3
1,656,284 + ABID97_RS07885 0.18 +0.6
1,656,285 - ABID97_RS07885 0.19 -0.5
1,656,330 + ABID97_RS07885 0.26 -0.5
1,656,381 + ABID97_RS07885 0.35 +0.1
1,656,382 - ABID97_RS07885 0.35 -0.1
1,656,382 - ABID97_RS07885 0.35 +2.1
1,656,382 - ABID97_RS07885 0.35 -1.2
1,656,382 - ABID97_RS07885 0.35 +0.2
1,656,382 - ABID97_RS07885 0.35 -0.4
1,656,382 - ABID97_RS07885 0.35 +0.8
1,656,382 - ABID97_RS07885 0.35 -1.2
1,656,591 + ABID97_RS07885 0.72 +0.1
1,656,591 + ABID97_RS07885 0.72 -0.3
1,656,591 + ABID97_RS07885 0.72 -0.9
1,656,592 - ABID97_RS07885 0.72 +0.0

Or see this region's nucleotide sequence