Strain Fitness in Variovorax sp. OAS795 around ABID97_RS07650

Experiment: Adenine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS07645 and ABID97_RS07650 are separated by 79 nucleotidesABID97_RS07650 and ABID97_RS07655 overlap by 4 nucleotidesABID97_RS07655 and ABID97_RS07660 overlap by 58 nucleotides ABID97_RS07645: ABID97_RS07645 - MFS transporter, at 1,614,596 to 1,615,936 _RS07645 ABID97_RS07650: ABID97_RS07650 - HAD family phosphatase, at 1,616,016 to 1,616,696 _RS07650 ABID97_RS07655: ABID97_RS07655 - hypothetical protein, at 1,616,693 to 1,617,028 _RS07655 ABID97_RS07660: ABID97_RS07660 - isopenicillin N synthase family oxygenase, at 1,616,971 to 1,617,981 _RS07660 Position (kb) 1616 1617Strain fitness (log2 ratio) -1 0 1at 1615.190 kb on + strand, within ABID97_RS07645at 1615.191 kb on - strand, within ABID97_RS07645at 1615.191 kb on - strand, within ABID97_RS07645at 1615.191 kb on - strand, within ABID97_RS07645at 1615.235 kb on + strand, within ABID97_RS07645at 1615.244 kb on + strand, within ABID97_RS07645at 1615.244 kb on + strand, within ABID97_RS07645at 1615.245 kb on - strand, within ABID97_RS07645at 1615.245 kb on - strand, within ABID97_RS07645at 1615.310 kb on + strand, within ABID97_RS07645at 1615.418 kb on + strand, within ABID97_RS07645at 1615.418 kb on + strand, within ABID97_RS07645at 1615.419 kb on - strand, within ABID97_RS07645at 1615.419 kb on - strand, within ABID97_RS07645at 1615.469 kb on + strand, within ABID97_RS07645at 1615.470 kb on - strand, within ABID97_RS07645at 1615.470 kb on - strand, within ABID97_RS07645at 1615.751 kb on + strand, within ABID97_RS07645at 1615.752 kb on - strand, within ABID97_RS07645at 1615.758 kb on - strand, within ABID97_RS07645at 1615.856 kb on + strandat 1615.856 kb on + strandat 1615.856 kb on + strandat 1615.857 kb on - strandat 1616.004 kb on + strandat 1616.004 kb on + strandat 1616.005 kb on - strandat 1616.133 kb on + strand, within ABID97_RS07650at 1616.133 kb on + strand, within ABID97_RS07650at 1616.133 kb on + strand, within ABID97_RS07650at 1616.134 kb on - strand, within ABID97_RS07650at 1616.209 kb on - strand, within ABID97_RS07650at 1616.209 kb on - strand, within ABID97_RS07650at 1616.816 kb on + strand, within ABID97_RS07655at 1616.831 kb on + strand, within ABID97_RS07655at 1616.832 kb on - strand, within ABID97_RS07655at 1616.832 kb on - strand, within ABID97_RS07655at 1616.834 kb on + strand, within ABID97_RS07655at 1616.864 kb on + strand, within ABID97_RS07655at 1616.864 kb on + strand, within ABID97_RS07655at 1616.864 kb on + strand, within ABID97_RS07655at 1616.865 kb on - strand, within ABID97_RS07655at 1617.026 kb on + strandat 1617.027 kb on - strandat 1617.027 kb on - strandat 1617.365 kb on + strand, within ABID97_RS07660at 1617.428 kb on + strand, within ABID97_RS07660at 1617.558 kb on - strand, within ABID97_RS07660at 1617.669 kb on - strand, within ABID97_RS07660at 1617.669 kb on - strand, within ABID97_RS07660at 1617.669 kb on - strand, within ABID97_RS07660

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenine (C)
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1,615,190 + ABID97_RS07645 0.44 +0.2
1,615,191 - ABID97_RS07645 0.44 +0.4
1,615,191 - ABID97_RS07645 0.44 +1.2
1,615,191 - ABID97_RS07645 0.44 +0.0
1,615,235 + ABID97_RS07645 0.48 +1.0
1,615,244 + ABID97_RS07645 0.48 +0.1
1,615,244 + ABID97_RS07645 0.48 +0.8
1,615,245 - ABID97_RS07645 0.48 +0.6
1,615,245 - ABID97_RS07645 0.48 +0.5
1,615,310 + ABID97_RS07645 0.53 -0.0
1,615,418 + ABID97_RS07645 0.61 -0.2
1,615,418 + ABID97_RS07645 0.61 +0.6
1,615,419 - ABID97_RS07645 0.61 +0.5
1,615,419 - ABID97_RS07645 0.61 -0.8
1,615,469 + ABID97_RS07645 0.65 -0.3
1,615,470 - ABID97_RS07645 0.65 +0.1
1,615,470 - ABID97_RS07645 0.65 +0.1
1,615,751 + ABID97_RS07645 0.86 -0.1
1,615,752 - ABID97_RS07645 0.86 -1.5
1,615,758 - ABID97_RS07645 0.87 -1.0
1,615,856 + +0.1
1,615,856 + -0.6
1,615,856 + -0.8
1,615,857 - -0.8
1,616,004 + -0.3
1,616,004 + -0.2
1,616,005 - -0.2
1,616,133 + ABID97_RS07650 0.17 +1.4
1,616,133 + ABID97_RS07650 0.17 +1.4
1,616,133 + ABID97_RS07650 0.17 +1.1
1,616,134 - ABID97_RS07650 0.17 -0.1
1,616,209 - ABID97_RS07650 0.28 +0.2
1,616,209 - ABID97_RS07650 0.28 -0.3
1,616,816 + ABID97_RS07655 0.37 +0.4
1,616,831 + ABID97_RS07655 0.41 +0.6
1,616,832 - ABID97_RS07655 0.41 +0.1
1,616,832 - ABID97_RS07655 0.41 +0.2
1,616,834 + ABID97_RS07655 0.42 -0.5
1,616,864 + ABID97_RS07655 0.51 -0.2
1,616,864 + ABID97_RS07655 0.51 +0.1
1,616,864 + ABID97_RS07655 0.51 +0.7
1,616,865 - ABID97_RS07655 0.51 -0.1
1,617,026 + +0.1
1,617,027 - -0.7
1,617,027 - +1.5
1,617,365 + ABID97_RS07660 0.39 -0.3
1,617,428 + ABID97_RS07660 0.45 -0.3
1,617,558 - ABID97_RS07660 0.58 -0.2
1,617,669 - ABID97_RS07660 0.69 +0.6
1,617,669 - ABID97_RS07660 0.69 +0.0
1,617,669 - ABID97_RS07660 0.69 -0.2

Or see this region's nucleotide sequence