Strain Fitness in Variovorax sp. OAS795 around ABID97_RS07530

Experiment: Adenine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS07520 and ABID97_RS07525 are separated by 111 nucleotidesABID97_RS07525 and ABID97_RS07530 are separated by 31 nucleotidesABID97_RS07530 and ABID97_RS07535 overlap by 4 nucleotidesABID97_RS07535 and ABID97_RS07540 are separated by 65 nucleotides ABID97_RS07520: ABID97_RS07520 - LysR family transcriptional regulator, at 1,590,248 to 1,590,595 _RS07520 ABID97_RS07525: ABID97_RS07525 - molybdate ABC transporter permease subunit, at 1,590,707 to 1,591,390 _RS07525 ABID97_RS07530: ABID97_RS07530 - molybdate ABC transporter substrate-binding protein, at 1,591,422 to 1,592,171 _RS07530 ABID97_RS07535: ABID97_RS07535 - ATP-binding cassette domain-containing protein, at 1,592,168 to 1,592,959 _RS07535 ABID97_RS07540: ABID97_RS07540 - DUF3305 domain-containing protein, at 1,593,025 to 1,593,570 _RS07540 Position (kb) 1591 1592 1593Strain fitness (log2 ratio) -3 -2 -1 0 1at 1590.518 kb on + strand, within ABID97_RS07520at 1590.518 kb on + strand, within ABID97_RS07520at 1590.701 kb on - strandat 1590.701 kb on - strandat 1590.977 kb on + strand, within ABID97_RS07525at 1590.977 kb on + strand, within ABID97_RS07525at 1590.978 kb on - strand, within ABID97_RS07525at 1591.278 kb on - strand, within ABID97_RS07525at 1591.941 kb on + strand, within ABID97_RS07530at 1591.941 kb on + strand, within ABID97_RS07530at 1591.941 kb on + strand, within ABID97_RS07530at 1591.942 kb on - strand, within ABID97_RS07530at 1591.942 kb on - strand, within ABID97_RS07530at 1591.942 kb on - strand, within ABID97_RS07530at 1591.977 kb on + strand, within ABID97_RS07530at 1592.363 kb on + strand, within ABID97_RS07535at 1592.363 kb on + strand, within ABID97_RS07535at 1592.363 kb on + strand, within ABID97_RS07535at 1592.364 kb on - strand, within ABID97_RS07535at 1592.414 kb on + strand, within ABID97_RS07535at 1592.429 kb on + strand, within ABID97_RS07535at 1592.429 kb on + strand, within ABID97_RS07535at 1592.429 kb on + strand, within ABID97_RS07535at 1592.430 kb on - strand, within ABID97_RS07535at 1592.430 kb on - strand, within ABID97_RS07535at 1592.430 kb on - strand, within ABID97_RS07535at 1592.430 kb on - strand, within ABID97_RS07535at 1592.430 kb on - strand, within ABID97_RS07535

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenine (C)
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1,590,518 + ABID97_RS07520 0.78 -0.1
1,590,518 + ABID97_RS07520 0.78 +0.1
1,590,701 - -0.2
1,590,701 - -0.3
1,590,977 + ABID97_RS07525 0.39 -2.1
1,590,977 + ABID97_RS07525 0.39 -1.7
1,590,978 - ABID97_RS07525 0.40 -2.3
1,591,278 - ABID97_RS07525 0.83 -1.7
1,591,941 + ABID97_RS07530 0.69 -1.7
1,591,941 + ABID97_RS07530 0.69 -2.2
1,591,941 + ABID97_RS07530 0.69 -2.1
1,591,942 - ABID97_RS07530 0.69 -2.8
1,591,942 - ABID97_RS07530 0.69 -0.2
1,591,942 - ABID97_RS07530 0.69 -1.2
1,591,977 + ABID97_RS07530 0.74 -1.2
1,592,363 + ABID97_RS07535 0.25 -2.0
1,592,363 + ABID97_RS07535 0.25 -2.0
1,592,363 + ABID97_RS07535 0.25 -2.5
1,592,364 - ABID97_RS07535 0.25 -1.1
1,592,414 + ABID97_RS07535 0.31 -2.2
1,592,429 + ABID97_RS07535 0.33 -2.7
1,592,429 + ABID97_RS07535 0.33 -1.7
1,592,429 + ABID97_RS07535 0.33 -2.0
1,592,430 - ABID97_RS07535 0.33 -1.5
1,592,430 - ABID97_RS07535 0.33 -1.5
1,592,430 - ABID97_RS07535 0.33 -1.7
1,592,430 - ABID97_RS07535 0.33 -1.7
1,592,430 - ABID97_RS07535 0.33 -0.4

Or see this region's nucleotide sequence