Experiment: Adenine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS07515 and ABID97_RS07520 are separated by 76 nucleotides ABID97_RS07520 and ABID97_RS07525 are separated by 111 nucleotides ABID97_RS07525 and ABID97_RS07530 are separated by 31 nucleotides
ABID97_RS07515: ABID97_RS07515 - formate dehydrogenase subunit alpha, at 1,587,298 to 1,590,171
_RS07515
ABID97_RS07520: ABID97_RS07520 - LysR family transcriptional regulator, at 1,590,248 to 1,590,595
_RS07520
ABID97_RS07525: ABID97_RS07525 - molybdate ABC transporter permease subunit, at 1,590,707 to 1,591,390
_RS07525
ABID97_RS07530: ABID97_RS07530 - molybdate ABC transporter substrate-binding protein, at 1,591,422 to 1,592,171
_RS07530
Position (kb)
1590
1591 Strain fitness (log2 ratio)
-2
-1
0
1 at 1589.522 kb on - strand, within ABID97_RS07515 at 1590.014 kb on - strand at 1590.014 kb on - strand at 1590.152 kb on + strand at 1590.281 kb on + strand at 1590.282 kb on - strand at 1590.518 kb on + strand, within ABID97_RS07520 at 1590.518 kb on + strand, within ABID97_RS07520 at 1590.701 kb on - strand at 1590.701 kb on - strand at 1590.977 kb on + strand, within ABID97_RS07525 at 1590.977 kb on + strand, within ABID97_RS07525 at 1590.978 kb on - strand, within ABID97_RS07525 at 1591.278 kb on - strand, within ABID97_RS07525
Per-strain Table
Position Strand Gene LocusTag Fraction Adenine (C) remove 1,589,522 - ABID97_RS07515 0.77 -0.2 1,590,014 - +0.1 1,590,014 - -0.9 1,590,152 + +0.2 1,590,281 + -0.2 1,590,282 - +0.4 1,590,518 + ABID97_RS07520 0.78 -0.1 1,590,518 + ABID97_RS07520 0.78 +0.1 1,590,701 - -0.2 1,590,701 - -0.3 1,590,977 + ABID97_RS07525 0.39 -2.1 1,590,977 + ABID97_RS07525 0.39 -1.7 1,590,978 - ABID97_RS07525 0.40 -2.3 1,591,278 - ABID97_RS07525 0.83 -1.7
Or see this region's nucleotide sequence