Strain Fitness in Variovorax sp. OAS795 around ABID97_RS07520

Experiment: Adenine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS07515 and ABID97_RS07520 are separated by 76 nucleotidesABID97_RS07520 and ABID97_RS07525 are separated by 111 nucleotidesABID97_RS07525 and ABID97_RS07530 are separated by 31 nucleotides ABID97_RS07515: ABID97_RS07515 - formate dehydrogenase subunit alpha, at 1,587,298 to 1,590,171 _RS07515 ABID97_RS07520: ABID97_RS07520 - LysR family transcriptional regulator, at 1,590,248 to 1,590,595 _RS07520 ABID97_RS07525: ABID97_RS07525 - molybdate ABC transporter permease subunit, at 1,590,707 to 1,591,390 _RS07525 ABID97_RS07530: ABID97_RS07530 - molybdate ABC transporter substrate-binding protein, at 1,591,422 to 1,592,171 _RS07530 Position (kb) 1590 1591Strain fitness (log2 ratio) -2 -1 0 1at 1589.522 kb on - strand, within ABID97_RS07515at 1590.014 kb on - strandat 1590.014 kb on - strandat 1590.152 kb on + strandat 1590.281 kb on + strandat 1590.282 kb on - strandat 1590.518 kb on + strand, within ABID97_RS07520at 1590.518 kb on + strand, within ABID97_RS07520at 1590.701 kb on - strandat 1590.701 kb on - strandat 1590.977 kb on + strand, within ABID97_RS07525at 1590.977 kb on + strand, within ABID97_RS07525at 1590.978 kb on - strand, within ABID97_RS07525at 1591.278 kb on - strand, within ABID97_RS07525

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenine (C)
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1,589,522 - ABID97_RS07515 0.77 -0.2
1,590,014 - +0.1
1,590,014 - -0.9
1,590,152 + +0.2
1,590,281 + -0.2
1,590,282 - +0.4
1,590,518 + ABID97_RS07520 0.78 -0.1
1,590,518 + ABID97_RS07520 0.78 +0.1
1,590,701 - -0.2
1,590,701 - -0.3
1,590,977 + ABID97_RS07525 0.39 -2.1
1,590,977 + ABID97_RS07525 0.39 -1.7
1,590,978 - ABID97_RS07525 0.40 -2.3
1,591,278 - ABID97_RS07525 0.83 -1.7

Or see this region's nucleotide sequence