Strain Fitness in Variovorax sp. OAS795 around ABID97_RS07410

Experiment: Adenine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS07405 and ABID97_RS07410 are separated by 21 nucleotidesABID97_RS07410 and ABID97_RS07415 are separated by 6 nucleotides ABID97_RS07405: ABID97_RS07405 - NAD(P)H-dependent glycerol-3-phosphate dehydrogenase, at 1,564,456 to 1,565,493 _RS07405 ABID97_RS07410: ABID97_RS07410 - carboxylating nicotinate-nucleotide diphosphorylase, at 1,565,515 to 1,566,399 _RS07410 ABID97_RS07415: ABID97_RS07415 - quinolinate synthase NadA, at 1,566,406 to 1,567,524 _RS07415 Position (kb) 1565 1566 1567Strain fitness (log2 ratio) -3 -2 -1 0 1at 1564.595 kb on - strand, within ABID97_RS07405at 1564.844 kb on + strand, within ABID97_RS07405at 1564.845 kb on - strand, within ABID97_RS07405at 1564.845 kb on - strand, within ABID97_RS07405at 1564.984 kb on + strand, within ABID97_RS07405at 1564.984 kb on + strand, within ABID97_RS07405at 1564.984 kb on + strand, within ABID97_RS07405at 1564.985 kb on - strand, within ABID97_RS07405at 1564.985 kb on - strand, within ABID97_RS07405at 1564.985 kb on - strand, within ABID97_RS07405at 1564.985 kb on - strand, within ABID97_RS07405at 1564.985 kb on - strand, within ABID97_RS07405at 1565.308 kb on + strand, within ABID97_RS07405at 1565.308 kb on + strand, within ABID97_RS07405at 1565.308 kb on + strand, within ABID97_RS07405at 1565.308 kb on + strand, within ABID97_RS07405at 1565.308 kb on + strand, within ABID97_RS07405at 1565.309 kb on - strand, within ABID97_RS07405at 1565.309 kb on - strand, within ABID97_RS07405at 1565.887 kb on + strand, within ABID97_RS07410at 1565.888 kb on - strand, within ABID97_RS07410at 1565.888 kb on - strand, within ABID97_RS07410at 1565.968 kb on + strand, within ABID97_RS07410at 1566.437 kb on - strandat 1566.589 kb on + strand, within ABID97_RS07415at 1566.589 kb on + strand, within ABID97_RS07415at 1566.589 kb on + strand, within ABID97_RS07415at 1566.589 kb on + strand, within ABID97_RS07415at 1566.590 kb on - strand, within ABID97_RS07415at 1566.590 kb on - strand, within ABID97_RS07415at 1566.590 kb on - strand, within ABID97_RS07415at 1566.590 kb on - strand, within ABID97_RS07415at 1566.590 kb on - strand, within ABID97_RS07415at 1566.590 kb on - strand, within ABID97_RS07415at 1566.859 kb on + strand, within ABID97_RS07415at 1566.860 kb on - strand, within ABID97_RS07415at 1566.860 kb on - strand, within ABID97_RS07415at 1566.994 kb on + strand, within ABID97_RS07415at 1566.994 kb on + strand, within ABID97_RS07415at 1566.994 kb on + strand, within ABID97_RS07415at 1566.995 kb on - strand, within ABID97_RS07415at 1566.995 kb on - strand, within ABID97_RS07415at 1566.995 kb on - strand, within ABID97_RS07415at 1566.995 kb on - strand, within ABID97_RS07415at 1566.995 kb on - strand, within ABID97_RS07415

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenine (C)
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1,564,595 - ABID97_RS07405 0.13 -1.3
1,564,844 + ABID97_RS07405 0.37 -0.9
1,564,845 - ABID97_RS07405 0.37 -1.4
1,564,845 - ABID97_RS07405 0.37 -0.8
1,564,984 + ABID97_RS07405 0.51 -1.1
1,564,984 + ABID97_RS07405 0.51 -0.4
1,564,984 + ABID97_RS07405 0.51 -0.9
1,564,985 - ABID97_RS07405 0.51 -1.7
1,564,985 - ABID97_RS07405 0.51 -0.9
1,564,985 - ABID97_RS07405 0.51 -0.6
1,564,985 - ABID97_RS07405 0.51 -2.8
1,564,985 - ABID97_RS07405 0.51 -1.1
1,565,308 + ABID97_RS07405 0.82 -0.8
1,565,308 + ABID97_RS07405 0.82 -0.6
1,565,308 + ABID97_RS07405 0.82 -2.1
1,565,308 + ABID97_RS07405 0.82 -1.0
1,565,308 + ABID97_RS07405 0.82 -0.8
1,565,309 - ABID97_RS07405 0.82 +1.0
1,565,309 - ABID97_RS07405 0.82 -1.3
1,565,887 + ABID97_RS07410 0.42 -1.1
1,565,888 - ABID97_RS07410 0.42 -1.0
1,565,888 - ABID97_RS07410 0.42 -1.7
1,565,968 + ABID97_RS07410 0.51 -1.4
1,566,437 - +0.8
1,566,589 + ABID97_RS07415 0.16 -1.1
1,566,589 + ABID97_RS07415 0.16 -2.8
1,566,589 + ABID97_RS07415 0.16 -3.2
1,566,589 + ABID97_RS07415 0.16 -2.1
1,566,590 - ABID97_RS07415 0.16 -1.4
1,566,590 - ABID97_RS07415 0.16 -0.2
1,566,590 - ABID97_RS07415 0.16 -2.1
1,566,590 - ABID97_RS07415 0.16 -1.2
1,566,590 - ABID97_RS07415 0.16 -0.8
1,566,590 - ABID97_RS07415 0.16 -1.4
1,566,859 + ABID97_RS07415 0.40 -1.8
1,566,860 - ABID97_RS07415 0.41 -1.1
1,566,860 - ABID97_RS07415 0.41 -1.5
1,566,994 + ABID97_RS07415 0.53 -2.9
1,566,994 + ABID97_RS07415 0.53 -0.2
1,566,994 + ABID97_RS07415 0.53 -2.1
1,566,995 - ABID97_RS07415 0.53 -1.5
1,566,995 - ABID97_RS07415 0.53 -1.5
1,566,995 - ABID97_RS07415 0.53 -1.6
1,566,995 - ABID97_RS07415 0.53 -1.8
1,566,995 - ABID97_RS07415 0.53 +0.2

Or see this region's nucleotide sequence