Strain Fitness in Variovorax sp. OAS795 around ABID97_RS06920

Experiment: Adenine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS06915 and ABID97_RS06920 are separated by 130 nucleotidesABID97_RS06920 and ABID97_RS06925 overlap by 4 nucleotides ABID97_RS06915: ABID97_RS06915 - acyltransferase, at 1,462,865 to 1,463,968 _RS06915 ABID97_RS06920: ABID97_RS06920 - 7-cyano-7-deazaguanine synthase QueC, at 1,464,099 to 1,464,835 _RS06920 ABID97_RS06925: ABID97_RS06925 - ABC transporter ATP-binding protein/permease, at 1,464,832 to 1,466,616 _RS06925 Position (kb) 1464 1465Strain fitness (log2 ratio) -2 -1 0 1at 1463.202 kb on + strand, within ABID97_RS06915at 1463.202 kb on + strand, within ABID97_RS06915at 1463.202 kb on + strand, within ABID97_RS06915at 1463.203 kb on - strand, within ABID97_RS06915at 1463.203 kb on - strand, within ABID97_RS06915at 1463.203 kb on - strand, within ABID97_RS06915at 1463.386 kb on - strand, within ABID97_RS06915at 1463.505 kb on - strand, within ABID97_RS06915at 1463.523 kb on + strand, within ABID97_RS06915at 1463.524 kb on - strand, within ABID97_RS06915at 1463.524 kb on - strand, within ABID97_RS06915at 1463.524 kb on - strand, within ABID97_RS06915at 1463.526 kb on + strand, within ABID97_RS06915at 1463.526 kb on + strand, within ABID97_RS06915at 1463.526 kb on + strand, within ABID97_RS06915at 1463.602 kb on - strand, within ABID97_RS06915at 1463.602 kb on - strand, within ABID97_RS06915at 1463.602 kb on - strand, within ABID97_RS06915at 1463.652 kb on + strand, within ABID97_RS06915at 1463.652 kb on + strand, within ABID97_RS06915at 1463.653 kb on - strand, within ABID97_RS06915at 1463.653 kb on - strand, within ABID97_RS06915at 1463.653 kb on - strand, within ABID97_RS06915at 1463.653 kb on - strand, within ABID97_RS06915at 1463.676 kb on + strand, within ABID97_RS06915at 1463.676 kb on + strand, within ABID97_RS06915at 1463.677 kb on - strand, within ABID97_RS06915at 1463.688 kb on + strand, within ABID97_RS06915at 1463.688 kb on + strand, within ABID97_RS06915at 1463.688 kb on + strand, within ABID97_RS06915at 1463.689 kb on - strand, within ABID97_RS06915at 1463.689 kb on - strand, within ABID97_RS06915at 1463.721 kb on + strand, within ABID97_RS06915at 1463.721 kb on + strand, within ABID97_RS06915at 1463.722 kb on - strand, within ABID97_RS06915at 1463.722 kb on - strand, within ABID97_RS06915at 1464.011 kb on - strandat 1464.242 kb on + strand, within ABID97_RS06920at 1464.728 kb on + strand, within ABID97_RS06920at 1464.729 kb on - strand, within ABID97_RS06920at 1465.007 kb on + strandat 1465.007 kb on + strandat 1465.008 kb on - strandat 1465.217 kb on + strand, within ABID97_RS06925at 1465.275 kb on - strand, within ABID97_RS06925at 1465.604 kb on + strand, within ABID97_RS06925at 1465.604 kb on + strand, within ABID97_RS06925at 1465.796 kb on + strand, within ABID97_RS06925at 1465.797 kb on - strand, within ABID97_RS06925at 1465.797 kb on - strand, within ABID97_RS06925

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenine (C)
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1,463,202 + ABID97_RS06915 0.31 +0.2
1,463,202 + ABID97_RS06915 0.31 +1.2
1,463,202 + ABID97_RS06915 0.31 +0.2
1,463,203 - ABID97_RS06915 0.31 +0.6
1,463,203 - ABID97_RS06915 0.31 -0.4
1,463,203 - ABID97_RS06915 0.31 +1.0
1,463,386 - ABID97_RS06915 0.47 +0.4
1,463,505 - ABID97_RS06915 0.58 -0.0
1,463,523 + ABID97_RS06915 0.60 +0.7
1,463,524 - ABID97_RS06915 0.60 -0.4
1,463,524 - ABID97_RS06915 0.60 -0.3
1,463,524 - ABID97_RS06915 0.60 -0.1
1,463,526 + ABID97_RS06915 0.60 +1.0
1,463,526 + ABID97_RS06915 0.60 +0.5
1,463,526 + ABID97_RS06915 0.60 +0.9
1,463,602 - ABID97_RS06915 0.67 +1.0
1,463,602 - ABID97_RS06915 0.67 +0.0
1,463,602 - ABID97_RS06915 0.67 +0.0
1,463,652 + ABID97_RS06915 0.71 -0.2
1,463,652 + ABID97_RS06915 0.71 -1.9
1,463,653 - ABID97_RS06915 0.71 -0.2
1,463,653 - ABID97_RS06915 0.71 -0.3
1,463,653 - ABID97_RS06915 0.71 +0.3
1,463,653 - ABID97_RS06915 0.71 -0.0
1,463,676 + ABID97_RS06915 0.73 +0.2
1,463,676 + ABID97_RS06915 0.73 +0.1
1,463,677 - ABID97_RS06915 0.74 +0.1
1,463,688 + ABID97_RS06915 0.75 -0.5
1,463,688 + ABID97_RS06915 0.75 +0.3
1,463,688 + ABID97_RS06915 0.75 +1.6
1,463,689 - ABID97_RS06915 0.75 +0.3
1,463,689 - ABID97_RS06915 0.75 +0.2
1,463,721 + ABID97_RS06915 0.78 +0.2
1,463,721 + ABID97_RS06915 0.78 +0.5
1,463,722 - ABID97_RS06915 0.78 -0.5
1,463,722 - ABID97_RS06915 0.78 +0.1
1,464,011 - +0.2
1,464,242 + ABID97_RS06920 0.19 -1.1
1,464,728 + ABID97_RS06920 0.85 -1.5
1,464,729 - ABID97_RS06920 0.85 -1.0
1,465,007 + -0.5
1,465,007 + +0.2
1,465,008 - -0.9
1,465,217 + ABID97_RS06925 0.22 -0.5
1,465,275 - ABID97_RS06925 0.25 +0.4
1,465,604 + ABID97_RS06925 0.43 -0.6
1,465,604 + ABID97_RS06925 0.43 -0.6
1,465,796 + ABID97_RS06925 0.54 -0.9
1,465,797 - ABID97_RS06925 0.54 +0.4
1,465,797 - ABID97_RS06925 0.54 -0.5

Or see this region's nucleotide sequence