Experiment: Adenine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS04425 and ABID97_RS04430 are separated by 352 nucleotides ABID97_RS04430 and ABID97_RS04435 are separated by 39 nucleotides ABID97_RS04435 and ABID97_RS04440 overlap by 4 nucleotides
ABID97_RS04425: ABID97_RS04425 - response regulator transcription factor, at 915,908 to 916,603
_RS04425
ABID97_RS04430: ABID97_RS04430 - Re/Si-specific NAD(P)(+) transhydrogenase subunit alpha, at 916,956 to 918,086
_RS04430
ABID97_RS04435: ABID97_RS04435 - NAD(P) transhydrogenase subunit alpha, at 918,126 to 918,458
_RS04435
ABID97_RS04440: ABID97_RS04440 - NAD(P)(+) transhydrogenase (Re/Si-specific) subunit beta, at 918,455 to 919,882
_RS04440
Position (kb) 916
917
918
919 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 915.960 kb on + strand at 915.960 kb on + strand at 915.960 kb on + strand at 916.248 kb on + strand, within ABID97_RS04425 at 916.249 kb on - strand, within ABID97_RS04425 at 916.521 kb on + strand, within ABID97_RS04425 at 916.521 kb on + strand, within ABID97_RS04425 at 916.522 kb on - strand, within ABID97_RS04425 at 916.656 kb on - strand at 916.705 kb on - strand at 916.736 kb on + strand at 916.930 kb on - strand at 916.955 kb on + strand at 916.955 kb on + strand at 916.955 kb on + strand at 916.956 kb on - strand at 916.956 kb on - strand at 916.956 kb on - strand at 916.964 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Adenine (C) remove 915,960 + -0.6 915,960 + -0.9 915,960 + -0.3 916,248 + ABID97_RS04425 0.49 -0.3 916,249 - ABID97_RS04425 0.49 +0.2 916,521 + ABID97_RS04425 0.88 -0.7 916,521 + ABID97_RS04425 0.88 +0.5 916,522 - ABID97_RS04425 0.88 -3.5 916,656 - +1.5 916,705 - +0.2 916,736 + +0.5 916,930 - +0.4 916,955 + -0.1 916,955 + -0.7 916,955 + -0.5 916,956 - +0.2 916,956 - -0.0 916,956 - -1.1 916,964 - -0.3
Or see this region's nucleotide sequence