Experiment: Adenine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS04170 and ABID97_RS04175 are separated by 31 nucleotides ABID97_RS04175 and ABID97_RS04180 are separated by 101 nucleotides
ABID97_RS04170: ABID97_RS04170 - DUF445 domain-containing protein, at 857,168 to 858,391
_RS04170
ABID97_RS04175: ABID97_RS04175 - acetylornithine deacetylase, at 858,423 to 859,589
_RS04175
ABID97_RS04180: ABID97_RS04180 - glycerophosphodiester phosphodiesterase, at 859,691 to 860,885
_RS04180
Position (kb) 858
859
860 Strain fitness (log2 ratio) -1
0
1 at 857.538 kb on + strand, within ABID97_RS04170 at 857.538 kb on + strand, within ABID97_RS04170 at 857.539 kb on - strand, within ABID97_RS04170 at 857.763 kb on + strand, within ABID97_RS04170 at 857.764 kb on - strand, within ABID97_RS04170 at 857.764 kb on - strand, within ABID97_RS04170 at 858.300 kb on + strand at 858.301 kb on - strand at 858.301 kb on - strand at 858.345 kb on + strand at 858.345 kb on + strand at 858.346 kb on - strand at 858.346 kb on - strand at 858.346 kb on - strand at 858.751 kb on + strand, within ABID97_RS04175 at 859.049 kb on - strand, within ABID97_RS04175 at 859.181 kb on - strand, within ABID97_RS04175 at 859.181 kb on - strand, within ABID97_RS04175 at 859.288 kb on + strand, within ABID97_RS04175 at 859.444 kb on + strand, within ABID97_RS04175 at 859.444 kb on + strand, within ABID97_RS04175 at 859.445 kb on - strand, within ABID97_RS04175 at 859.445 kb on - strand, within ABID97_RS04175 at 859.706 kb on + strand at 859.706 kb on + strand at 859.707 kb on - strand at 859.707 kb on - strand at 859.863 kb on - strand, within ABID97_RS04180 at 859.863 kb on - strand, within ABID97_RS04180 at 860.210 kb on + strand, within ABID97_RS04180 at 860.210 kb on + strand, within ABID97_RS04180 at 860.234 kb on + strand, within ABID97_RS04180 at 860.235 kb on - strand, within ABID97_RS04180 at 860.321 kb on + strand, within ABID97_RS04180 at 860.321 kb on + strand, within ABID97_RS04180 at 860.321 kb on + strand, within ABID97_RS04180 at 860.321 kb on + strand, within ABID97_RS04180 at 860.322 kb on - strand, within ABID97_RS04180 at 860.322 kb on - strand, within ABID97_RS04180 at 860.322 kb on - strand, within ABID97_RS04180 at 860.322 kb on - strand, within ABID97_RS04180 at 860.354 kb on + strand, within ABID97_RS04180 at 860.354 kb on + strand, within ABID97_RS04180 at 860.354 kb on + strand, within ABID97_RS04180 at 860.354 kb on + strand, within ABID97_RS04180 at 860.354 kb on + strand, within ABID97_RS04180 at 860.354 kb on + strand, within ABID97_RS04180 at 860.354 kb on + strand, within ABID97_RS04180 at 860.355 kb on - strand, within ABID97_RS04180 at 860.355 kb on - strand, within ABID97_RS04180 at 860.355 kb on - strand, within ABID97_RS04180 at 860.355 kb on - strand, within ABID97_RS04180 at 860.355 kb on - strand, within ABID97_RS04180 at 860.355 kb on - strand, within ABID97_RS04180 at 860.355 kb on - strand, within ABID97_RS04180 at 860.355 kb on - strand, within ABID97_RS04180 at 860.542 kb on - strand, within ABID97_RS04180 at 860.572 kb on - strand, within ABID97_RS04180 at 860.572 kb on - strand, within ABID97_RS04180
Per-strain Table
Position Strand Gene LocusTag Fraction Adenine (C) remove 857,538 + ABID97_RS04170 0.30 -0.3 857,538 + ABID97_RS04170 0.30 +0.1 857,539 - ABID97_RS04170 0.30 +0.1 857,763 + ABID97_RS04170 0.49 -1.2 857,764 - ABID97_RS04170 0.49 +1.1 857,764 - ABID97_RS04170 0.49 +0.1 858,300 + +0.1 858,301 - +0.1 858,301 - -0.5 858,345 + -0.0 858,345 + -0.1 858,346 - -0.0 858,346 - -0.6 858,346 - -1.1 858,751 + ABID97_RS04175 0.28 +0.8 859,049 - ABID97_RS04175 0.54 +0.1 859,181 - ABID97_RS04175 0.65 -0.3 859,181 - ABID97_RS04175 0.65 -0.4 859,288 + ABID97_RS04175 0.74 -0.0 859,444 + ABID97_RS04175 0.87 +0.4 859,444 + ABID97_RS04175 0.87 -1.2 859,445 - ABID97_RS04175 0.88 -0.3 859,445 - ABID97_RS04175 0.88 -0.1 859,706 + +0.3 859,706 + -1.0 859,707 - +0.3 859,707 - -0.4 859,863 - ABID97_RS04180 0.14 -0.2 859,863 - ABID97_RS04180 0.14 +0.9 860,210 + ABID97_RS04180 0.43 +0.1 860,210 + ABID97_RS04180 0.43 -1.0 860,234 + ABID97_RS04180 0.45 -0.3 860,235 - ABID97_RS04180 0.46 -1.2 860,321 + ABID97_RS04180 0.53 -0.2 860,321 + ABID97_RS04180 0.53 +0.4 860,321 + ABID97_RS04180 0.53 +0.8 860,321 + ABID97_RS04180 0.53 -0.1 860,322 - ABID97_RS04180 0.53 +0.0 860,322 - ABID97_RS04180 0.53 +0.7 860,322 - ABID97_RS04180 0.53 -0.8 860,322 - ABID97_RS04180 0.53 +0.0 860,354 + ABID97_RS04180 0.55 +0.5 860,354 + ABID97_RS04180 0.55 -0.2 860,354 + ABID97_RS04180 0.55 +0.3 860,354 + ABID97_RS04180 0.55 -0.8 860,354 + ABID97_RS04180 0.55 +0.1 860,354 + ABID97_RS04180 0.55 -0.4 860,354 + ABID97_RS04180 0.55 +0.2 860,355 - ABID97_RS04180 0.56 +0.3 860,355 - ABID97_RS04180 0.56 -0.2 860,355 - ABID97_RS04180 0.56 -0.4 860,355 - ABID97_RS04180 0.56 -0.7 860,355 - ABID97_RS04180 0.56 -0.4 860,355 - ABID97_RS04180 0.56 -0.5 860,355 - ABID97_RS04180 0.56 +0.1 860,355 - ABID97_RS04180 0.56 -1.1 860,542 - ABID97_RS04180 0.71 -0.3 860,572 - ABID97_RS04180 0.74 +0.3 860,572 - ABID97_RS04180 0.74 +0.7
Or see this region's nucleotide sequence