Strain Fitness in Variovorax sp. OAS795 around ABID97_RS03655

Experiment: Adenine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS03650 and ABID97_RS03655 are separated by 8 nucleotidesABID97_RS03655 and ABID97_RS03660 are separated by 29 nucleotides ABID97_RS03650: ABID97_RS03650 - FAD-linked oxidase C-terminal domain-containing protein, at 751,137 to 752,639 _RS03650 ABID97_RS03655: ABID97_RS03655 - glycolate oxidase subunit GlcE, at 752,648 to 753,775 _RS03655 ABID97_RS03660: ABID97_RS03660 - glycolate oxidase subunit GlcF, at 753,805 to 755,037 _RS03660 Position (kb) 752 753 754Strain fitness (log2 ratio) -1 0 1 2at 751.653 kb on + strand, within ABID97_RS03650at 751.653 kb on + strand, within ABID97_RS03650at 751.654 kb on - strand, within ABID97_RS03650at 751.986 kb on + strand, within ABID97_RS03650at 752.190 kb on + strand, within ABID97_RS03650at 752.190 kb on + strand, within ABID97_RS03650at 752.190 kb on + strand, within ABID97_RS03650at 752.190 kb on + strand, within ABID97_RS03650at 752.191 kb on - strand, within ABID97_RS03650at 752.191 kb on - strand, within ABID97_RS03650at 752.191 kb on - strand, within ABID97_RS03650at 752.191 kb on - strand, within ABID97_RS03650at 752.191 kb on - strand, within ABID97_RS03650at 752.191 kb on - strand, within ABID97_RS03650at 752.268 kb on + strand, within ABID97_RS03650at 752.268 kb on + strand, within ABID97_RS03650at 752.269 kb on - strand, within ABID97_RS03650at 752.269 kb on - strand, within ABID97_RS03650at 752.269 kb on - strand, within ABID97_RS03650at 752.804 kb on + strand, within ABID97_RS03655at 752.805 kb on - strand, within ABID97_RS03655at 753.002 kb on + strand, within ABID97_RS03655at 753.916 kb on + strandat 753.917 kb on - strandat 753.917 kb on - strandat 753.961 kb on + strand, within ABID97_RS03660at 753.961 kb on + strand, within ABID97_RS03660at 753.961 kb on + strand, within ABID97_RS03660at 753.961 kb on + strand, within ABID97_RS03660at 753.961 kb on + strand, within ABID97_RS03660at 753.962 kb on - strand, within ABID97_RS03660at 753.962 kb on - strand, within ABID97_RS03660at 753.962 kb on - strand, within ABID97_RS03660at 754.075 kb on + strand, within ABID97_RS03660at 754.604 kb on - strand, within ABID97_RS03660at 754.604 kb on - strand, within ABID97_RS03660

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenine (C)
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751,653 + ABID97_RS03650 0.34 +0.4
751,653 + ABID97_RS03650 0.34 +1.1
751,654 - ABID97_RS03650 0.34 +0.2
751,986 + ABID97_RS03650 0.56 +0.3
752,190 + ABID97_RS03650 0.70 +0.2
752,190 + ABID97_RS03650 0.70 +0.0
752,190 + ABID97_RS03650 0.70 +0.2
752,190 + ABID97_RS03650 0.70 -0.5
752,191 - ABID97_RS03650 0.70 +0.3
752,191 - ABID97_RS03650 0.70 +0.2
752,191 - ABID97_RS03650 0.70 +0.1
752,191 - ABID97_RS03650 0.70 +0.2
752,191 - ABID97_RS03650 0.70 +0.2
752,191 - ABID97_RS03650 0.70 +2.7
752,268 + ABID97_RS03650 0.75 -0.6
752,268 + ABID97_RS03650 0.75 +0.7
752,269 - ABID97_RS03650 0.75 +1.2
752,269 - ABID97_RS03650 0.75 +0.3
752,269 - ABID97_RS03650 0.75 +0.0
752,804 + ABID97_RS03655 0.14 +0.7
752,805 - ABID97_RS03655 0.14 +1.7
753,002 + ABID97_RS03655 0.31 +0.2
753,916 + +0.4
753,917 - +0.2
753,917 - +1.9
753,961 + ABID97_RS03660 0.13 +0.5
753,961 + ABID97_RS03660 0.13 +1.5
753,961 + ABID97_RS03660 0.13 +0.6
753,961 + ABID97_RS03660 0.13 +0.1
753,961 + ABID97_RS03660 0.13 +0.1
753,962 - ABID97_RS03660 0.13 -0.1
753,962 - ABID97_RS03660 0.13 -0.7
753,962 - ABID97_RS03660 0.13 +0.4
754,075 + ABID97_RS03660 0.22 +0.1
754,604 - ABID97_RS03660 0.65 -0.1
754,604 - ABID97_RS03660 0.65 +0.6

Or see this region's nucleotide sequence