Strain Fitness in Variovorax sp. OAS795 around ABID97_RS03650

Experiment: Adenine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS03645 and ABID97_RS03650 are separated by 123 nucleotidesABID97_RS03650 and ABID97_RS03655 are separated by 8 nucleotides ABID97_RS03645: ABID97_RS03645 - LysR substrate-binding domain-containing protein, at 750,128 to 751,013 _RS03645 ABID97_RS03650: ABID97_RS03650 - FAD-linked oxidase C-terminal domain-containing protein, at 751,137 to 752,639 _RS03650 ABID97_RS03655: ABID97_RS03655 - glycolate oxidase subunit GlcE, at 752,648 to 753,775 _RS03655 Position (kb) 751 752 753Strain fitness (log2 ratio) -1 0 1 2at 750.330 kb on - strand, within ABID97_RS03645at 750.482 kb on + strand, within ABID97_RS03645at 750.579 kb on + strand, within ABID97_RS03645at 750.643 kb on - strand, within ABID97_RS03645at 750.643 kb on - strand, within ABID97_RS03645at 750.932 kb on + strandat 750.933 kb on - strandat 751.095 kb on + strandat 751.132 kb on + strandat 751.132 kb on + strandat 751.133 kb on - strandat 751.169 kb on + strandat 751.293 kb on + strand, within ABID97_RS03650at 751.566 kb on + strand, within ABID97_RS03650at 751.567 kb on - strand, within ABID97_RS03650at 751.569 kb on + strand, within ABID97_RS03650at 751.569 kb on + strand, within ABID97_RS03650at 751.570 kb on - strand, within ABID97_RS03650at 751.653 kb on + strand, within ABID97_RS03650at 751.653 kb on + strand, within ABID97_RS03650at 751.654 kb on - strand, within ABID97_RS03650at 751.986 kb on + strand, within ABID97_RS03650at 752.190 kb on + strand, within ABID97_RS03650at 752.190 kb on + strand, within ABID97_RS03650at 752.190 kb on + strand, within ABID97_RS03650at 752.190 kb on + strand, within ABID97_RS03650at 752.191 kb on - strand, within ABID97_RS03650at 752.191 kb on - strand, within ABID97_RS03650at 752.191 kb on - strand, within ABID97_RS03650at 752.191 kb on - strand, within ABID97_RS03650at 752.191 kb on - strand, within ABID97_RS03650at 752.191 kb on - strand, within ABID97_RS03650at 752.268 kb on + strand, within ABID97_RS03650at 752.268 kb on + strand, within ABID97_RS03650at 752.269 kb on - strand, within ABID97_RS03650at 752.269 kb on - strand, within ABID97_RS03650at 752.269 kb on - strand, within ABID97_RS03650at 752.804 kb on + strand, within ABID97_RS03655at 752.805 kb on - strand, within ABID97_RS03655at 753.002 kb on + strand, within ABID97_RS03655

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenine (C)
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750,330 - ABID97_RS03645 0.23 -0.0
750,482 + ABID97_RS03645 0.40 -0.1
750,579 + ABID97_RS03645 0.51 -0.1
750,643 - ABID97_RS03645 0.58 -0.1
750,643 - ABID97_RS03645 0.58 -1.1
750,932 + -0.2
750,933 - +0.4
751,095 + -0.1
751,132 + -0.5
751,132 + -0.2
751,133 - -0.1
751,169 + -0.5
751,293 + ABID97_RS03650 0.10 +1.1
751,566 + ABID97_RS03650 0.29 +0.4
751,567 - ABID97_RS03650 0.29 +0.9
751,569 + ABID97_RS03650 0.29 +1.2
751,569 + ABID97_RS03650 0.29 +0.1
751,570 - ABID97_RS03650 0.29 +0.7
751,653 + ABID97_RS03650 0.34 +0.4
751,653 + ABID97_RS03650 0.34 +1.1
751,654 - ABID97_RS03650 0.34 +0.2
751,986 + ABID97_RS03650 0.56 +0.3
752,190 + ABID97_RS03650 0.70 +0.2
752,190 + ABID97_RS03650 0.70 +0.0
752,190 + ABID97_RS03650 0.70 +0.2
752,190 + ABID97_RS03650 0.70 -0.5
752,191 - ABID97_RS03650 0.70 +0.3
752,191 - ABID97_RS03650 0.70 +0.2
752,191 - ABID97_RS03650 0.70 +0.1
752,191 - ABID97_RS03650 0.70 +0.2
752,191 - ABID97_RS03650 0.70 +0.2
752,191 - ABID97_RS03650 0.70 +2.7
752,268 + ABID97_RS03650 0.75 -0.6
752,268 + ABID97_RS03650 0.75 +0.7
752,269 - ABID97_RS03650 0.75 +1.2
752,269 - ABID97_RS03650 0.75 +0.3
752,269 - ABID97_RS03650 0.75 +0.0
752,804 + ABID97_RS03655 0.14 +0.7
752,805 - ABID97_RS03655 0.14 +1.7
753,002 + ABID97_RS03655 0.31 +0.2

Or see this region's nucleotide sequence