Strain Fitness in Variovorax sp. OAS795 around ABID97_RS00330

Experiment: Adenine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS00325 and ABID97_RS00330 overlap by 4 nucleotidesABID97_RS00330 and ABID97_RS00335 are separated by 115 nucleotidesABID97_RS00335 and ABID97_RS00340 are separated by 70 nucleotides ABID97_RS00325: ABID97_RS00325 - efflux RND transporter permease subunit, at 72,703 to 75,864 _RS00325 ABID97_RS00330: ABID97_RS00330 - efflux transporter outer membrane subunit, at 75,861 to 77,285 _RS00330 ABID97_RS00335: ABID97_RS00335 - c-type cytochrome, at 77,401 to 78,027 _RS00335 ABID97_RS00340: ABID97_RS00340 - DUF2946 family protein, at 78,098 to 78,646 _RS00340 Position (kb) 75 76 77 78Strain fitness (log2 ratio) -2 -1 0 1 2at 74.962 kb on + strand, within ABID97_RS00325at 74.962 kb on + strand, within ABID97_RS00325at 74.962 kb on + strand, within ABID97_RS00325at 74.962 kb on + strand, within ABID97_RS00325at 74.963 kb on - strand, within ABID97_RS00325at 75.145 kb on + strand, within ABID97_RS00325at 75.364 kb on + strand, within ABID97_RS00325at 75.365 kb on - strandat 75.452 kb on - strand, within ABID97_RS00325at 75.466 kb on + strand, within ABID97_RS00325at 75.467 kb on - strand, within ABID97_RS00325at 75.467 kb on - strand, within ABID97_RS00325at 75.467 kb on - strand, within ABID97_RS00325at 75.467 kb on - strand, within ABID97_RS00325at 75.929 kb on + strandat 75.929 kb on + strandat 75.930 kb on - strandat 75.930 kb on - strandat 75.933 kb on + strandat 75.933 kb on + strandat 76.203 kb on + strand, within ABID97_RS00330at 76.204 kb on - strand, within ABID97_RS00330at 76.204 kb on - strand, within ABID97_RS00330at 76.245 kb on + strand, within ABID97_RS00330at 76.246 kb on - strand, within ABID97_RS00330at 76.246 kb on - strand, within ABID97_RS00330at 76.246 kb on - strand, within ABID97_RS00330at 76.329 kb on + strand, within ABID97_RS00330at 76.329 kb on + strand, within ABID97_RS00330at 76.329 kb on + strand, within ABID97_RS00330at 76.329 kb on + strand, within ABID97_RS00330at 76.329 kb on + strand, within ABID97_RS00330at 76.330 kb on - strand, within ABID97_RS00330at 76.560 kb on + strand, within ABID97_RS00330at 76.561 kb on - strand, within ABID97_RS00330at 76.561 kb on - strand, within ABID97_RS00330at 76.984 kb on - strand, within ABID97_RS00330at 77.175 kb on + strandat 77.238 kb on + strandat 77.342 kb on + strandat 77.342 kb on + strandat 77.342 kb on + strandat 77.342 kb on + strandat 77.343 kb on - strandat 77.343 kb on - strandat 77.343 kb on - strandat 77.343 kb on - strandat 77.345 kb on - strandat 77.419 kb on + strandat 77.419 kb on + strandat 77.419 kb on + strandat 77.420 kb on - strandat 77.420 kb on - strandat 77.533 kb on + strand, within ABID97_RS00335at 77.533 kb on + strand, within ABID97_RS00335at 77.534 kb on - strand, within ABID97_RS00335at 77.534 kb on - strand, within ABID97_RS00335at 77.534 kb on - strand, within ABID97_RS00335at 77.534 kb on - strand, within ABID97_RS00335at 77.534 kb on - strand, within ABID97_RS00335at 77.590 kb on + strand, within ABID97_RS00335at 77.590 kb on + strand, within ABID97_RS00335at 77.800 kb on + strand, within ABID97_RS00335at 77.899 kb on + strand, within ABID97_RS00335at 77.899 kb on + strand, within ABID97_RS00335at 77.900 kb on - strand, within ABID97_RS00335at 78.025 kb on + strandat 78.025 kb on + strandat 78.025 kb on + strandat 78.026 kb on - strandat 78.026 kb on - strandat 78.026 kb on - strandat 78.026 kb on - strandat 78.108 kb on - strandat 78.273 kb on + strand, within ABID97_RS00340at 78.273 kb on + strand, within ABID97_RS00340at 78.274 kb on - strand, within ABID97_RS00340at 78.274 kb on - strand, within ABID97_RS00340

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenine (C)
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74,962 + ABID97_RS00325 0.71 -0.6
74,962 + ABID97_RS00325 0.71 -0.2
74,962 + ABID97_RS00325 0.71 -1.1
74,962 + ABID97_RS00325 0.71 +0.2
74,963 - ABID97_RS00325 0.71 -0.6
75,145 + ABID97_RS00325 0.77 -0.1
75,364 + ABID97_RS00325 0.84 -1.4
75,365 - +2.5
75,452 - ABID97_RS00325 0.87 -0.1
75,466 + ABID97_RS00325 0.87 +0.6
75,467 - ABID97_RS00325 0.87 -0.2
75,467 - ABID97_RS00325 0.87 +0.6
75,467 - ABID97_RS00325 0.87 -1.1
75,467 - ABID97_RS00325 0.87 +0.2
75,929 + -0.3
75,929 + -0.2
75,930 - -0.1
75,930 - -0.5
75,933 + -0.2
75,933 + -0.0
76,203 + ABID97_RS00330 0.24 +0.2
76,204 - ABID97_RS00330 0.24 +0.3
76,204 - ABID97_RS00330 0.24 +0.1
76,245 + ABID97_RS00330 0.27 -0.5
76,246 - ABID97_RS00330 0.27 -0.4
76,246 - ABID97_RS00330 0.27 -0.9
76,246 - ABID97_RS00330 0.27 -0.2
76,329 + ABID97_RS00330 0.33 -0.2
76,329 + ABID97_RS00330 0.33 -0.3
76,329 + ABID97_RS00330 0.33 -0.8
76,329 + ABID97_RS00330 0.33 -0.5
76,329 + ABID97_RS00330 0.33 -0.2
76,330 - ABID97_RS00330 0.33 +0.6
76,560 + ABID97_RS00330 0.49 -0.3
76,561 - ABID97_RS00330 0.49 -0.2
76,561 - ABID97_RS00330 0.49 +1.0
76,984 - ABID97_RS00330 0.79 -0.3
77,175 + -0.0
77,238 + -0.4
77,342 + +1.2
77,342 + -0.5
77,342 + +1.6
77,342 + -0.0
77,343 - -0.9
77,343 - +0.3
77,343 - -0.3
77,343 - -0.4
77,345 - -0.0
77,419 + -0.5
77,419 + +0.3
77,419 + -0.0
77,420 - -0.2
77,420 - -0.6
77,533 + ABID97_RS00335 0.21 -0.4
77,533 + ABID97_RS00335 0.21 +0.1
77,534 - ABID97_RS00335 0.21 -0.1
77,534 - ABID97_RS00335 0.21 -1.1
77,534 - ABID97_RS00335 0.21 -0.0
77,534 - ABID97_RS00335 0.21 -0.8
77,534 - ABID97_RS00335 0.21 -0.1
77,590 + ABID97_RS00335 0.30 +0.1
77,590 + ABID97_RS00335 0.30 -0.4
77,800 + ABID97_RS00335 0.64 -0.9
77,899 + ABID97_RS00335 0.79 -0.1
77,899 + ABID97_RS00335 0.79 +0.3
77,900 - ABID97_RS00335 0.80 -0.2
78,025 + -0.4
78,025 + -0.3
78,025 + +0.3
78,026 - +1.2
78,026 - +1.1
78,026 - -0.7
78,026 - -0.1
78,108 - -0.7
78,273 + ABID97_RS00340 0.32 -1.4
78,273 + ABID97_RS00340 0.32 -2.7
78,274 - ABID97_RS00340 0.32 -1.5
78,274 - ABID97_RS00340 0.32 -2.2

Or see this region's nucleotide sequence