Strain Fitness in Variovorax sp. OAS795 around ABID97_RS00265

Experiment: Adenine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS00260 and ABID97_RS00265 are separated by 41 nucleotidesABID97_RS00265 and ABID97_RS00270 are separated by 48 nucleotidesABID97_RS00270 and ABID97_RS00275 overlap by 4 nucleotides ABID97_RS00260: ABID97_RS00260 - PilT/PilU family type 4a pilus ATPase, at 59,366 to 60,502 _RS00260 ABID97_RS00265: ABID97_RS00265 - NAD(P)-dependent oxidoreductase, at 60,544 to 61,452 _RS00265 ABID97_RS00270: ABID97_RS00270 - BON domain-containing protein, at 61,501 to 62,259 _RS00270 ABID97_RS00275: ABID97_RS00275 - SIS domain-containing protein, at 62,256 to 62,900 _RS00275 Position (kb) 60 61 62Strain fitness (log2 ratio) -2 -1 0 1 2at 59.985 kb on + strand, within ABID97_RS00260at 59.985 kb on + strand, within ABID97_RS00260at 59.985 kb on + strand, within ABID97_RS00260at 59.985 kb on + strand, within ABID97_RS00260at 59.985 kb on + strand, within ABID97_RS00260at 59.985 kb on + strand, within ABID97_RS00260at 59.986 kb on - strand, within ABID97_RS00260at 59.986 kb on - strand, within ABID97_RS00260at 59.986 kb on - strand, within ABID97_RS00260at 59.986 kb on - strand, within ABID97_RS00260at 60.531 kb on + strandat 60.531 kb on + strandat 60.531 kb on + strandat 60.531 kb on + strandat 60.568 kb on + strandat 60.568 kb on + strandat 60.568 kb on + strandat 60.568 kb on + strandat 60.568 kb on + strandat 60.569 kb on - strandat 60.670 kb on + strand, within ABID97_RS00265at 60.670 kb on + strand, within ABID97_RS00265at 60.671 kb on - strand, within ABID97_RS00265at 60.671 kb on - strand, within ABID97_RS00265at 60.671 kb on - strand, within ABID97_RS00265at 60.671 kb on - strand, within ABID97_RS00265at 61.279 kb on + strand, within ABID97_RS00265at 61.279 kb on + strand, within ABID97_RS00265at 61.384 kb on + strandat 61.384 kb on + strandat 61.384 kb on + strandat 61.384 kb on + strandat 61.385 kb on - strandat 61.385 kb on - strandat 61.385 kb on - strandat 61.450 kb on + strandat 61.451 kb on - strandat 61.516 kb on - strandat 61.772 kb on + strand, within ABID97_RS00270at 61.772 kb on + strand, within ABID97_RS00270at 61.772 kb on + strand, within ABID97_RS00270at 61.773 kb on - strand, within ABID97_RS00270at 62.018 kb on + strand, within ABID97_RS00270at 62.018 kb on + strand, within ABID97_RS00270at 62.018 kb on + strand, within ABID97_RS00270at 62.018 kb on + strand, within ABID97_RS00270at 62.019 kb on - strand, within ABID97_RS00270at 62.019 kb on - strand, within ABID97_RS00270at 62.036 kb on + strand, within ABID97_RS00270at 62.036 kb on + strand, within ABID97_RS00270at 62.036 kb on + strand, within ABID97_RS00270at 62.036 kb on + strand, within ABID97_RS00270at 62.036 kb on + strand, within ABID97_RS00270at 62.036 kb on + strand, within ABID97_RS00270at 62.036 kb on + strand, within ABID97_RS00270at 62.036 kb on + strand, within ABID97_RS00270at 62.036 kb on + strand, within ABID97_RS00270at 62.036 kb on + strand, within ABID97_RS00270at 62.036 kb on + strand, within ABID97_RS00270at 62.036 kb on + strand, within ABID97_RS00270at 62.036 kb on + strand, within ABID97_RS00270at 62.037 kb on - strand, within ABID97_RS00270at 62.037 kb on - strand, within ABID97_RS00270at 62.037 kb on - strand, within ABID97_RS00270at 62.037 kb on - strand, within ABID97_RS00270at 62.037 kb on - strand, within ABID97_RS00270at 62.037 kb on - strand, within ABID97_RS00270at 62.150 kb on - strand, within ABID97_RS00270at 62.283 kb on + strandat 62.283 kb on + strandat 62.283 kb on + strandat 62.376 kb on + strand, within ABID97_RS00275at 62.376 kb on + strand, within ABID97_RS00275at 62.376 kb on + strand, within ABID97_RS00275at 62.376 kb on + strand, within ABID97_RS00275at 62.377 kb on - strand, within ABID97_RS00275at 62.377 kb on - strand, within ABID97_RS00275at 62.377 kb on - strand, within ABID97_RS00275at 62.377 kb on - strand, within ABID97_RS00275at 62.377 kb on - strand, within ABID97_RS00275

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenine (C)
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59,985 + ABID97_RS00260 0.54 +0.0
59,985 + ABID97_RS00260 0.54 +0.5
59,985 + ABID97_RS00260 0.54 +0.5
59,985 + ABID97_RS00260 0.54 -0.3
59,985 + ABID97_RS00260 0.54 -0.7
59,985 + ABID97_RS00260 0.54 +0.0
59,986 - ABID97_RS00260 0.55 +0.3
59,986 - ABID97_RS00260 0.55 +0.5
59,986 - ABID97_RS00260 0.55 +0.2
59,986 - ABID97_RS00260 0.55 +0.3
60,531 + +0.1
60,531 + +0.3
60,531 + -0.3
60,531 + +0.0
60,568 + -0.6
60,568 + +0.3
60,568 + +0.0
60,568 + +0.0
60,568 + -0.2
60,569 - +0.2
60,670 + ABID97_RS00265 0.14 -0.5
60,670 + ABID97_RS00265 0.14 -0.3
60,671 - ABID97_RS00265 0.14 -0.5
60,671 - ABID97_RS00265 0.14 -0.6
60,671 - ABID97_RS00265 0.14 -0.8
60,671 - ABID97_RS00265 0.14 -1.9
61,279 + ABID97_RS00265 0.81 +0.1
61,279 + ABID97_RS00265 0.81 -0.6
61,384 + +1.9
61,384 + -0.2
61,384 + -0.2
61,384 + +0.5
61,385 - -0.4
61,385 - +0.3
61,385 - -0.4
61,450 + -0.2
61,451 - +0.0
61,516 - -0.7
61,772 + ABID97_RS00270 0.36 -0.5
61,772 + ABID97_RS00270 0.36 -0.8
61,772 + ABID97_RS00270 0.36 -0.3
61,773 - ABID97_RS00270 0.36 -1.1
62,018 + ABID97_RS00270 0.68 -1.1
62,018 + ABID97_RS00270 0.68 +0.0
62,018 + ABID97_RS00270 0.68 -0.6
62,018 + ABID97_RS00270 0.68 -0.4
62,019 - ABID97_RS00270 0.68 -0.9
62,019 - ABID97_RS00270 0.68 -0.1
62,036 + ABID97_RS00270 0.70 -0.5
62,036 + ABID97_RS00270 0.70 -0.2
62,036 + ABID97_RS00270 0.70 -0.4
62,036 + ABID97_RS00270 0.70 -1.5
62,036 + ABID97_RS00270 0.70 -0.4
62,036 + ABID97_RS00270 0.70 -0.0
62,036 + ABID97_RS00270 0.70 -0.0
62,036 + ABID97_RS00270 0.70 +2.5
62,036 + ABID97_RS00270 0.70 -0.4
62,036 + ABID97_RS00270 0.70 +1.2
62,036 + ABID97_RS00270 0.70 +0.0
62,036 + ABID97_RS00270 0.70 -1.1
62,036 + ABID97_RS00270 0.70 +2.1
62,037 - ABID97_RS00270 0.71 -0.6
62,037 - ABID97_RS00270 0.71 +0.8
62,037 - ABID97_RS00270 0.71 -0.8
62,037 - ABID97_RS00270 0.71 -0.5
62,037 - ABID97_RS00270 0.71 +0.1
62,037 - ABID97_RS00270 0.71 -0.3
62,150 - ABID97_RS00270 0.86 +0.6
62,283 + +0.4
62,283 + -0.4
62,283 + +0.8
62,376 + ABID97_RS00275 0.19 +0.4
62,376 + ABID97_RS00275 0.19 -0.5
62,376 + ABID97_RS00275 0.19 -0.2
62,376 + ABID97_RS00275 0.19 -0.1
62,377 - ABID97_RS00275 0.19 +0.1
62,377 - ABID97_RS00275 0.19 -0.3
62,377 - ABID97_RS00275 0.19 -0.3
62,377 - ABID97_RS00275 0.19 -0.1
62,377 - ABID97_RS00275 0.19 -0.1

Or see this region's nucleotide sequence