Strain Fitness in Variovorax sp. OAS795 around ABID97_RS00005

Experiment: Adenine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS00005 and ABID97_RS00010 are separated by 93 nucleotides ABID97_RS00005: ABID97_RS00005 - ATP-binding cassette domain-containing protein, at 210 to 2,114 _RS00005 ABID97_RS00010: ABID97_RS00010 - phospholipase D family protein, at 2,208 to 3,953 _RS00010 Position (kb) 0 1 2 3Strain fitness (log2 ratio) -1 0 1 2at 0.083 kb on + strandat 0.083 kb on + strandat 0.083 kb on + strandat 0.084 kb on - strandat 0.084 kb on - strandat 0.084 kb on - strandat 0.084 kb on - strandat 0.084 kb on - strandat 0.084 kb on - strandat 0.084 kb on - strandat 0.084 kb on - strandat 0.085 kb on + strandat 0.085 kb on + strandat 0.086 kb on - strandat 0.352 kb on + strandat 0.417 kb on + strand, within ABID97_RS00005at 0.417 kb on + strand, within ABID97_RS00005at 0.417 kb on + strand, within ABID97_RS00005at 0.417 kb on + strand, within ABID97_RS00005at 0.418 kb on - strand, within ABID97_RS00005at 0.418 kb on - strand, within ABID97_RS00005at 0.510 kb on + strand, within ABID97_RS00005at 0.510 kb on + strand, within ABID97_RS00005at 0.510 kb on + strand, within ABID97_RS00005at 0.511 kb on - strand, within ABID97_RS00005at 0.511 kb on - strand, within ABID97_RS00005at 0.511 kb on - strand, within ABID97_RS00005at 0.511 kb on - strand, within ABID97_RS00005at 0.511 kb on - strand, within ABID97_RS00005at 0.511 kb on - strand, within ABID97_RS00005at 0.511 kb on - strand, within ABID97_RS00005at 0.715 kb on + strand, within ABID97_RS00005at 0.715 kb on + strand, within ABID97_RS00005at 0.715 kb on + strand, within ABID97_RS00005at 0.715 kb on + strand, within ABID97_RS00005at 0.715 kb on + strand, within ABID97_RS00005at 0.715 kb on + strand, within ABID97_RS00005at 0.715 kb on + strand, within ABID97_RS00005at 0.715 kb on + strand, within ABID97_RS00005at 0.716 kb on - strand, within ABID97_RS00005at 0.716 kb on - strand, within ABID97_RS00005at 0.716 kb on - strand, within ABID97_RS00005at 0.716 kb on - strand, within ABID97_RS00005at 0.900 kb on + strand, within ABID97_RS00005at 0.900 kb on + strand, within ABID97_RS00005at 0.901 kb on - strand, within ABID97_RS00005at 0.901 kb on - strand, within ABID97_RS00005at 0.901 kb on - strand, within ABID97_RS00005at 1.335 kb on + strand, within ABID97_RS00005at 1.335 kb on + strand, within ABID97_RS00005at 1.335 kb on + strand, within ABID97_RS00005at 1.336 kb on - strand, within ABID97_RS00005at 1.447 kb on - strand, within ABID97_RS00005at 1.447 kb on - strand, within ABID97_RS00005at 1.447 kb on - strand, within ABID97_RS00005at 1.447 kb on - strand, within ABID97_RS00005at 1.635 kb on + strand, within ABID97_RS00005at 1.635 kb on + strand, within ABID97_RS00005at 1.636 kb on - strand, within ABID97_RS00005at 1.636 kb on - strand, within ABID97_RS00005at 1.735 kb on - strand, within ABID97_RS00005at 1.899 kb on + strand, within ABID97_RS00005at 1.899 kb on + strand, within ABID97_RS00005at 1.899 kb on + strand, within ABID97_RS00005at 1.900 kb on - strand, within ABID97_RS00005at 1.900 kb on - strand, within ABID97_RS00005at 2.004 kb on + strandat 2.004 kb on + strandat 2.004 kb on + strandat 2.004 kb on + strandat 2.004 kb on + strandat 2.005 kb on - strandat 2.005 kb on - strandat 2.169 kb on + strandat 2.169 kb on + strandat 2.174 kb on + strandat 2.174 kb on + strandat 2.174 kb on + strandat 2.174 kb on + strandat 2.174 kb on + strandat 2.174 kb on + strandat 2.174 kb on + strandat 2.174 kb on + strandat 2.174 kb on + strandat 2.174 kb on + strandat 2.175 kb on - strandat 2.175 kb on - strandat 2.175 kb on - strandat 2.175 kb on - strandat 2.175 kb on - strandat 2.176 kb on + strandat 2.176 kb on + strandat 2.176 kb on + strandat 2.176 kb on + strandat 2.176 kb on + strandat 2.176 kb on + strandat 2.176 kb on + strandat 2.176 kb on + strandat 2.176 kb on + strandat 2.176 kb on + strandat 2.176 kb on + strandat 2.176 kb on + strandat 2.176 kb on + strandat 2.176 kb on + strandat 2.176 kb on + strandat 2.176 kb on + strandat 2.176 kb on + strandat 2.177 kb on - strandat 2.177 kb on - strandat 2.177 kb on - strandat 2.177 kb on - strandat 2.177 kb on - strandat 2.177 kb on - strandat 2.177 kb on - strandat 2.177 kb on - strandat 2.177 kb on - strandat 2.177 kb on - strandat 2.177 kb on - strandat 2.177 kb on - strandat 2.178 kb on + strandat 2.178 kb on + strandat 2.178 kb on + strandat 2.178 kb on + strandat 2.178 kb on + strandat 2.178 kb on + strandat 2.178 kb on + strandat 2.178 kb on + strandat 2.178 kb on + strandat 2.179 kb on - strandat 2.179 kb on - strandat 2.179 kb on - strandat 2.179 kb on - strandat 2.179 kb on - strandat 2.179 kb on - strandat 2.179 kb on - strandat 2.179 kb on - strandat 2.179 kb on - strandat 2.179 kb on - strandat 2.179 kb on - strandat 2.179 kb on - strandat 2.221 kb on - strandat 2.221 kb on - strandat 2.485 kb on - strand, within ABID97_RS00010at 2.485 kb on - strand, within ABID97_RS00010at 2.485 kb on - strand, within ABID97_RS00010at 2.487 kb on + strand, within ABID97_RS00010at 2.487 kb on + strand, within ABID97_RS00010at 2.488 kb on - strand, within ABID97_RS00010at 2.488 kb on - strand, within ABID97_RS00010at 2.805 kb on + strand, within ABID97_RS00010at 2.805 kb on + strand, within ABID97_RS00010at 2.805 kb on + strand, within ABID97_RS00010at 2.805 kb on + strand, within ABID97_RS00010at 2.805 kb on + strand, within ABID97_RS00010at 2.805 kb on + strand, within ABID97_RS00010at 2.806 kb on - strand, within ABID97_RS00010at 2.898 kb on + strand, within ABID97_RS00010at 2.899 kb on - strand, within ABID97_RS00010at 2.899 kb on - strand, within ABID97_RS00010at 2.899 kb on - strand, within ABID97_RS00010at 2.899 kb on - strand, within ABID97_RS00010at 2.919 kb on + strand, within ABID97_RS00010

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenine (C)
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83 + +0.7
83 + +0.1
83 + +0.2
84 - +0.4
84 - +0.5
84 - +0.2
84 - +1.3
84 - -0.7
84 - +1.0
84 - -0.3
84 - +0.4
85 + +1.2
85 + +1.6
86 - -0.1
352 + +0.6
417 + ABID97_RS00005 0.11 +0.7
417 + ABID97_RS00005 0.11 +0.5
417 + ABID97_RS00005 0.11 +0.9
417 + ABID97_RS00005 0.11 +0.4
418 - ABID97_RS00005 0.11 +0.5
418 - ABID97_RS00005 0.11 +0.5
510 + ABID97_RS00005 0.16 -0.4
510 + ABID97_RS00005 0.16 +0.4
510 + ABID97_RS00005 0.16 -0.2
511 - ABID97_RS00005 0.16 +0.2
511 - ABID97_RS00005 0.16 +0.3
511 - ABID97_RS00005 0.16 +0.7
511 - ABID97_RS00005 0.16 +0.4
511 - ABID97_RS00005 0.16 -0.3
511 - ABID97_RS00005 0.16 -0.3
511 - ABID97_RS00005 0.16 +2.1
715 + ABID97_RS00005 0.27 +2.3
715 + ABID97_RS00005 0.27 +0.1
715 + ABID97_RS00005 0.27 -0.1
715 + ABID97_RS00005 0.27 -0.0
715 + ABID97_RS00005 0.27 -0.1
715 + ABID97_RS00005 0.27 +0.8
715 + ABID97_RS00005 0.27 -1.0
715 + ABID97_RS00005 0.27 +0.7
716 - ABID97_RS00005 0.27 -0.1
716 - ABID97_RS00005 0.27 -0.6
716 - ABID97_RS00005 0.27 -0.0
716 - ABID97_RS00005 0.27 +0.8
900 + ABID97_RS00005 0.36 +0.2
900 + ABID97_RS00005 0.36 +1.1
901 - ABID97_RS00005 0.36 +0.1
901 - ABID97_RS00005 0.36 -0.1
901 - ABID97_RS00005 0.36 -0.6
1,335 + ABID97_RS00005 0.59 -0.1
1,335 + ABID97_RS00005 0.59 +0.2
1,335 + ABID97_RS00005 0.59 -0.2
1,336 - ABID97_RS00005 0.59 -0.4
1,447 - ABID97_RS00005 0.65 +0.3
1,447 - ABID97_RS00005 0.65 +0.7
1,447 - ABID97_RS00005 0.65 +0.3
1,447 - ABID97_RS00005 0.65 +0.4
1,635 + ABID97_RS00005 0.75 -1.0
1,635 + ABID97_RS00005 0.75 +0.5
1,636 - ABID97_RS00005 0.75 +0.4
1,636 - ABID97_RS00005 0.75 +0.5
1,735 - ABID97_RS00005 0.80 +1.3
1,899 + ABID97_RS00005 0.89 +0.3
1,899 + ABID97_RS00005 0.89 +0.1
1,899 + ABID97_RS00005 0.89 +0.2
1,900 - ABID97_RS00005 0.89 +0.7
1,900 - ABID97_RS00005 0.89 +0.4
2,004 + -0.1
2,004 + +0.2
2,004 + +0.3
2,004 + +0.2
2,004 + +0.3
2,005 - +0.5
2,005 - -0.9
2,169 + +0.3
2,169 + +0.4
2,174 + +0.4
2,174 + -0.2
2,174 + -0.6
2,174 + +0.5
2,174 + -0.5
2,174 + -0.4
2,174 + +0.1
2,174 + +0.0
2,174 + +0.9
2,174 + +0.9
2,175 - +0.3
2,175 - +0.5
2,175 - +0.6
2,175 - -0.2
2,175 - -0.6
2,176 + +0.5
2,176 + -0.2
2,176 + -0.7
2,176 + -0.2
2,176 + -0.1
2,176 + +0.3
2,176 + +0.5
2,176 + +0.0
2,176 + -0.6
2,176 + -0.0
2,176 + +0.5
2,176 + +0.1
2,176 + -0.3
2,176 + -0.0
2,176 + -0.3
2,176 + +0.6
2,176 + +1.1
2,177 - +0.5
2,177 - -0.1
2,177 - +0.1
2,177 - +0.3
2,177 - +0.4
2,177 - +0.4
2,177 - -0.5
2,177 - +0.9
2,177 - +1.1
2,177 - +1.1
2,177 - +0.1
2,177 - -0.4
2,178 + +0.0
2,178 + -0.7
2,178 + +0.4
2,178 + +0.5
2,178 + +0.2
2,178 + +0.9
2,178 + +0.5
2,178 + +0.4
2,178 + +0.2
2,179 - +0.6
2,179 - +0.7
2,179 - -0.4
2,179 - +0.2
2,179 - -0.5
2,179 - -0.3
2,179 - +0.3
2,179 - +0.2
2,179 - +0.0
2,179 - +0.8
2,179 - +0.4
2,179 - +0.7
2,221 - -0.2
2,221 - +0.7
2,485 - ABID97_RS00010 0.16 -0.3
2,485 - ABID97_RS00010 0.16 +0.0
2,485 - ABID97_RS00010 0.16 -0.2
2,487 + ABID97_RS00010 0.16 -0.1
2,487 + ABID97_RS00010 0.16 -0.2
2,488 - ABID97_RS00010 0.16 +0.0
2,488 - ABID97_RS00010 0.16 +0.3
2,805 + ABID97_RS00010 0.34 +0.3
2,805 + ABID97_RS00010 0.34 -0.1
2,805 + ABID97_RS00010 0.34 +1.1
2,805 + ABID97_RS00010 0.34 -0.1
2,805 + ABID97_RS00010 0.34 +0.0
2,805 + ABID97_RS00010 0.34 +0.4
2,806 - ABID97_RS00010 0.34 +0.7
2,898 + ABID97_RS00010 0.40 +0.3
2,899 - ABID97_RS00010 0.40 -1.7
2,899 - ABID97_RS00010 0.40 +0.1
2,899 - ABID97_RS00010 0.40 -0.2
2,899 - ABID97_RS00010 0.40 +0.0
2,919 + ABID97_RS00010 0.41 +1.6

Or see this region's nucleotide sequence