Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_4266

Experiment: Aluminum chloride 2.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_4265 and PfGW456L13_4266 overlap by 1 nucleotidesPfGW456L13_4266 and PfGW456L13_4267 are separated by 196 nucleotides PfGW456L13_4265 - Succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5), at 4,777,485 to 4,778,366 _4265 PfGW456L13_4266 - Succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5), at 4,778,366 to 4,779,532 _4266 PfGW456L13_4267 - Dihydrolipoamide dehydrogenase of 2-oxoglutarate dehydrogenase (EC 1.8.1.4), at 4,779,729 to 4,781,165 _4267 Position (kb) 4778 4779 4780Strain fitness (log2 ratio) -1 0 1 2at 4777.473 kb on + strandat 4777.486 kb on + strandat 4777.486 kb on + strandat 4777.487 kb on - strandat 4777.487 kb on - strandat 4777.487 kb on - strandat 4777.487 kb on - strandat 4777.487 kb on - strandat 4778.778 kb on + strand, within PfGW456L13_4266at 4779.283 kb on - strand, within PfGW456L13_4266at 4779.642 kb on - strandat 4779.642 kb on - strandat 4779.642 kb on - strandat 4779.642 kb on - strandat 4779.731 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum chloride 2.5 mM
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4,777,473 + +2.1
4,777,486 + +0.3
4,777,486 + -0.3
4,777,487 - +0.9
4,777,487 - -0.6
4,777,487 - -0.1
4,777,487 - +0.5
4,777,487 - +1.1
4,778,778 + PfGW456L13_4266 0.35 +1.1
4,779,283 - PfGW456L13_4266 0.79 +2.5
4,779,642 - +1.8
4,779,642 - +0.8
4,779,642 - +1.3
4,779,642 - +1.6
4,779,731 - +1.4

Or see this region's nucleotide sequence