Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_21220

Experiment: m.b. benzoic 0.4 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_21210 and CA264_21215 overlap by 4 nucleotidesCA264_21215 and CA264_21220 are separated by 165 nucleotidesCA264_21220 and CA264_21225 overlap by 11 nucleotidesCA264_21225 and CA264_21230 overlap by 4 nucleotides CA264_21210: CA264_21210 - SOS mutagenesis and repair protein UmuC, at 107,057 to 108,325 _21210 CA264_21215: CA264_21215 - DNA polymerase V, at 108,322 to 108,777 _21215 CA264_21220: CA264_21220 - hypothetical protein, at 108,943 to 109,728 _21220 CA264_21225: CA264_21225 - hypothetical protein, at 109,718 to 110,140 _21225 CA264_21230: CA264_21230 - hypothetical protein, at 110,137 to 110,739 _21230 Position (kb) 108 109 110Strain fitness (log2 ratio) -2 -1 0 1 2 3at 107.974 kb on + strand, within CA264_21210at 107.975 kb on - strand, within CA264_21210at 107.978 kb on + strand, within CA264_21210at 107.978 kb on + strand, within CA264_21210at 107.997 kb on - strand, within CA264_21210at 108.086 kb on + strand, within CA264_21210at 108.086 kb on + strand, within CA264_21210at 108.086 kb on + strand, within CA264_21210at 108.087 kb on - strand, within CA264_21210at 108.087 kb on - strand, within CA264_21210at 108.089 kb on - strand, within CA264_21210at 108.089 kb on - strand, within CA264_21210at 108.106 kb on + strand, within CA264_21210at 108.106 kb on + strand, within CA264_21210at 108.106 kb on + strand, within CA264_21210at 108.107 kb on - strand, within CA264_21210at 108.107 kb on - strand, within CA264_21210at 108.107 kb on - strand, within CA264_21210at 108.111 kb on + strand, within CA264_21210at 108.112 kb on - strand, within CA264_21210at 108.116 kb on + strand, within CA264_21210at 108.116 kb on + strand, within CA264_21210at 108.122 kb on - strand, within CA264_21210at 108.122 kb on - strand, within CA264_21210at 108.124 kb on - strand, within CA264_21210at 108.124 kb on - strand, within CA264_21210at 108.131 kb on + strand, within CA264_21210at 108.131 kb on + strand, within CA264_21210at 108.133 kb on + strand, within CA264_21210at 108.134 kb on - strand, within CA264_21210at 108.200 kb on - strandat 108.233 kb on + strandat 108.252 kb on - strandat 108.286 kb on - strandat 108.293 kb on - strandat 108.302 kb on + strandat 108.303 kb on - strandat 108.303 kb on - strandat 108.319 kb on + strandat 108.343 kb on + strandat 108.412 kb on - strand, within CA264_21215at 108.467 kb on + strand, within CA264_21215at 108.468 kb on - strand, within CA264_21215at 108.557 kb on + strand, within CA264_21215at 108.558 kb on - strand, within CA264_21215at 108.558 kb on - strand, within CA264_21215at 108.567 kb on + strand, within CA264_21215at 108.567 kb on + strand, within CA264_21215at 108.568 kb on - strand, within CA264_21215at 108.568 kb on - strand, within CA264_21215at 108.568 kb on - strand, within CA264_21215at 108.568 kb on - strand, within CA264_21215at 108.568 kb on - strand, within CA264_21215at 108.580 kb on + strand, within CA264_21215at 108.590 kb on + strand, within CA264_21215at 108.590 kb on + strand, within CA264_21215at 108.591 kb on - strand, within CA264_21215at 108.628 kb on + strand, within CA264_21215at 108.628 kb on + strand, within CA264_21215at 108.628 kb on + strand, within CA264_21215at 108.629 kb on - strand, within CA264_21215at 108.633 kb on + strand, within CA264_21215at 108.634 kb on - strand, within CA264_21215at 108.640 kb on - strand, within CA264_21215at 108.760 kb on + strandat 108.760 kb on + strandat 108.760 kb on + strandat 108.761 kb on - strandat 108.842 kb on - strandat 108.886 kb on + strandat 108.895 kb on - strandat 108.908 kb on - strandat 108.908 kb on - strandat 108.908 kb on - strandat 108.908 kb on - strandat 108.957 kb on + strandat 108.958 kb on - strandat 108.964 kb on + strandat 108.964 kb on + strandat 108.964 kb on + strandat 108.984 kb on + strandat 108.999 kb on - strandat 109.053 kb on + strand, within CA264_21220at 109.055 kb on + strand, within CA264_21220at 109.055 kb on + strand, within CA264_21220at 109.055 kb on + strand, within CA264_21220at 109.057 kb on + strand, within CA264_21220at 109.057 kb on + strand, within CA264_21220at 109.058 kb on - strand, within CA264_21220at 109.058 kb on - strand, within CA264_21220at 109.058 kb on - strand, within CA264_21220at 109.058 kb on - strand, within CA264_21220at 109.081 kb on + strand, within CA264_21220at 109.093 kb on - strand, within CA264_21220at 109.140 kb on + strand, within CA264_21220at 109.145 kb on + strand, within CA264_21220at 109.168 kb on - strand, within CA264_21220at 109.168 kb on - strand, within CA264_21220at 109.176 kb on - strand, within CA264_21220at 109.209 kb on + strand, within CA264_21220at 109.209 kb on + strand, within CA264_21220at 109.225 kb on + strand, within CA264_21220at 109.225 kb on + strand, within CA264_21220at 109.225 kb on + strand, within CA264_21220at 109.225 kb on + strand, within CA264_21220at 109.225 kb on + strand, within CA264_21220at 109.226 kb on - strand, within CA264_21220at 109.256 kb on - strand, within CA264_21220at 109.279 kb on + strand, within CA264_21220at 109.280 kb on - strand, within CA264_21220at 109.332 kb on + strand, within CA264_21220at 109.333 kb on - strand, within CA264_21220at 109.343 kb on + strand, within CA264_21220at 109.343 kb on + strand, within CA264_21220at 109.344 kb on - strand, within CA264_21220at 109.387 kb on - strand, within CA264_21220at 109.413 kb on + strand, within CA264_21220at 109.413 kb on + strand, within CA264_21220at 109.413 kb on + strand, within CA264_21220at 109.413 kb on + strand, within CA264_21220at 109.414 kb on - strand, within CA264_21220at 109.415 kb on + strand, within CA264_21220at 109.427 kb on - strand, within CA264_21220at 109.433 kb on + strand, within CA264_21220at 109.433 kb on + strand, within CA264_21220at 109.441 kb on - strand, within CA264_21220at 109.447 kb on + strand, within CA264_21220at 109.460 kb on - strand, within CA264_21220at 109.478 kb on + strand, within CA264_21220at 109.479 kb on - strand, within CA264_21220at 109.546 kb on + strand, within CA264_21220at 109.547 kb on - strand, within CA264_21220at 109.547 kb on - strand, within CA264_21220at 109.552 kb on - strand, within CA264_21220at 109.610 kb on + strand, within CA264_21220at 109.611 kb on - strand, within CA264_21220at 109.611 kb on - strand, within CA264_21220at 109.631 kb on - strand, within CA264_21220at 109.631 kb on - strand, within CA264_21220at 109.631 kb on - strand, within CA264_21220at 109.631 kb on - strand, within CA264_21220at 109.631 kb on - strand, within CA264_21220at 109.631 kb on - strand, within CA264_21220at 109.632 kb on + strand, within CA264_21220at 109.681 kb on + strandat 109.684 kb on + strandat 109.931 kb on - strand, within CA264_21225at 109.952 kb on - strand, within CA264_21225at 110.141 kb on - strandat 110.141 kb on - strandat 110.176 kb on - strandat 110.190 kb on + strandat 110.337 kb on + strand, within CA264_21230at 110.338 kb on - strand, within CA264_21230at 110.340 kb on + strand, within CA264_21230at 110.340 kb on + strand, within CA264_21230at 110.341 kb on - strand, within CA264_21230at 110.341 kb on - strand, within CA264_21230at 110.341 kb on - strand, within CA264_21230at 110.341 kb on - strand, within CA264_21230at 110.343 kb on + strand, within CA264_21230at 110.354 kb on - strand, within CA264_21230at 110.354 kb on - strand, within CA264_21230at 110.369 kb on - strand, within CA264_21230at 110.369 kb on - strand, within CA264_21230at 110.381 kb on + strand, within CA264_21230at 110.381 kb on + strand, within CA264_21230at 110.382 kb on - strand, within CA264_21230at 110.386 kb on + strand, within CA264_21230at 110.415 kb on + strand, within CA264_21230at 110.415 kb on + strand, within CA264_21230at 110.495 kb on - strand, within CA264_21230at 110.495 kb on - strand, within CA264_21230at 110.495 kb on - strand, within CA264_21230at 110.495 kb on - strand, within CA264_21230at 110.523 kb on - strand, within CA264_21230at 110.550 kb on + strand, within CA264_21230at 110.574 kb on - strand, within CA264_21230at 110.680 kb on - strandat 110.700 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. benzoic 0.4 mg/ml
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107,974 + CA264_21210 0.72 -1.9
107,975 - CA264_21210 0.72 -0.4
107,978 + CA264_21210 0.73 -0.4
107,978 + CA264_21210 0.73 +2.2
107,997 - CA264_21210 0.74 +0.2
108,086 + CA264_21210 0.81 +0.4
108,086 + CA264_21210 0.81 -0.0
108,086 + CA264_21210 0.81 +0.6
108,087 - CA264_21210 0.81 -1.6
108,087 - CA264_21210 0.81 -0.1
108,089 - CA264_21210 0.81 +0.1
108,089 - CA264_21210 0.81 -0.3
108,106 + CA264_21210 0.83 +0.3
108,106 + CA264_21210 0.83 -0.3
108,106 + CA264_21210 0.83 +0.5
108,107 - CA264_21210 0.83 +0.1
108,107 - CA264_21210 0.83 +0.3
108,107 - CA264_21210 0.83 -0.4
108,111 + CA264_21210 0.83 +0.4
108,112 - CA264_21210 0.83 -0.5
108,116 + CA264_21210 0.83 -0.0
108,116 + CA264_21210 0.83 +0.3
108,122 - CA264_21210 0.84 -0.7
108,122 - CA264_21210 0.84 -0.6
108,124 - CA264_21210 0.84 +0.1
108,124 - CA264_21210 0.84 +2.8
108,131 + CA264_21210 0.85 -0.4
108,131 + CA264_21210 0.85 -1.3
108,133 + CA264_21210 0.85 -0.9
108,134 - CA264_21210 0.85 +0.6
108,200 - +1.0
108,233 + -0.6
108,252 - -0.3
108,286 - +1.8
108,293 - -0.1
108,302 + -0.3
108,303 - +1.7
108,303 - +0.0
108,319 + -1.0
108,343 + +2.0
108,412 - CA264_21215 0.20 +0.5
108,467 + CA264_21215 0.32 -0.7
108,468 - CA264_21215 0.32 +0.7
108,557 + CA264_21215 0.52 +0.8
108,558 - CA264_21215 0.52 -0.2
108,558 - CA264_21215 0.52 -0.8
108,567 + CA264_21215 0.54 -0.8
108,567 + CA264_21215 0.54 +0.4
108,568 - CA264_21215 0.54 -0.1
108,568 - CA264_21215 0.54 +0.7
108,568 - CA264_21215 0.54 -0.7
108,568 - CA264_21215 0.54 -0.8
108,568 - CA264_21215 0.54 +0.1
108,580 + CA264_21215 0.57 +1.4
108,590 + CA264_21215 0.59 +0.1
108,590 + CA264_21215 0.59 -0.1
108,591 - CA264_21215 0.59 +0.1
108,628 + CA264_21215 0.67 -0.3
108,628 + CA264_21215 0.67 -0.1
108,628 + CA264_21215 0.67 +0.4
108,629 - CA264_21215 0.67 -0.2
108,633 + CA264_21215 0.68 +0.7
108,634 - CA264_21215 0.68 +2.2
108,640 - CA264_21215 0.70 -0.0
108,760 + +1.2
108,760 + -0.6
108,760 + -0.8
108,761 - -0.0
108,842 - -0.7
108,886 + +0.8
108,895 - -1.0
108,908 - +0.2
108,908 - +0.4
108,908 - -0.6
108,908 - +0.9
108,957 + +0.8
108,958 - -0.3
108,964 + +0.3
108,964 + +0.7
108,964 + +0.1
108,984 + +0.7
108,999 - +1.2
109,053 + CA264_21220 0.14 +1.8
109,055 + CA264_21220 0.14 -0.2
109,055 + CA264_21220 0.14 +0.4
109,055 + CA264_21220 0.14 -0.4
109,057 + CA264_21220 0.15 +1.0
109,057 + CA264_21220 0.15 +0.4
109,058 - CA264_21220 0.15 -0.8
109,058 - CA264_21220 0.15 -1.1
109,058 - CA264_21220 0.15 +0.4
109,058 - CA264_21220 0.15 -1.2
109,081 + CA264_21220 0.18 -0.8
109,093 - CA264_21220 0.19 +0.1
109,140 + CA264_21220 0.25 +0.1
109,145 + CA264_21220 0.26 +1.2
109,168 - CA264_21220 0.29 -0.2
109,168 - CA264_21220 0.29 +1.5
109,176 - CA264_21220 0.30 -0.0
109,209 + CA264_21220 0.34 -1.1
109,209 + CA264_21220 0.34 +0.7
109,225 + CA264_21220 0.36 +1.0
109,225 + CA264_21220 0.36 +0.0
109,225 + CA264_21220 0.36 +0.0
109,225 + CA264_21220 0.36 +2.0
109,225 + CA264_21220 0.36 +0.2
109,226 - CA264_21220 0.36 -0.6
109,256 - CA264_21220 0.40 -2.2
109,279 + CA264_21220 0.43 -0.3
109,280 - CA264_21220 0.43 +0.8
109,332 + CA264_21220 0.49 +0.2
109,333 - CA264_21220 0.50 -0.3
109,343 + CA264_21220 0.51 +0.4
109,343 + CA264_21220 0.51 +1.2
109,344 - CA264_21220 0.51 +0.2
109,387 - CA264_21220 0.56 -0.0
109,413 + CA264_21220 0.60 +3.0
109,413 + CA264_21220 0.60 +0.3
109,413 + CA264_21220 0.60 +0.7
109,413 + CA264_21220 0.60 +0.1
109,414 - CA264_21220 0.60 +0.6
109,415 + CA264_21220 0.60 +0.1
109,427 - CA264_21220 0.62 +0.1
109,433 + CA264_21220 0.62 -1.0
109,433 + CA264_21220 0.62 +0.5
109,441 - CA264_21220 0.63 -0.0
109,447 + CA264_21220 0.64 -0.7
109,460 - CA264_21220 0.66 +2.2
109,478 + CA264_21220 0.68 +0.8
109,479 - CA264_21220 0.68 -0.6
109,546 + CA264_21220 0.77 +0.2
109,547 - CA264_21220 0.77 +0.0
109,547 - CA264_21220 0.77 +0.5
109,552 - CA264_21220 0.77 +0.4
109,610 + CA264_21220 0.85 +0.6
109,611 - CA264_21220 0.85 +0.2
109,611 - CA264_21220 0.85 +0.8
109,631 - CA264_21220 0.88 -0.1
109,631 - CA264_21220 0.88 -0.5
109,631 - CA264_21220 0.88 +1.0
109,631 - CA264_21220 0.88 +0.2
109,631 - CA264_21220 0.88 +0.4
109,631 - CA264_21220 0.88 -0.2
109,632 + CA264_21220 0.88 +0.5
109,681 + -0.1
109,684 + -0.1
109,931 - CA264_21225 0.50 -0.3
109,952 - CA264_21225 0.55 -0.7
110,141 - -0.3
110,141 - +0.4
110,176 - +1.8
110,190 + -1.2
110,337 + CA264_21230 0.33 +0.2
110,338 - CA264_21230 0.33 +0.3
110,340 + CA264_21230 0.34 -0.3
110,340 + CA264_21230 0.34 -0.7
110,341 - CA264_21230 0.34 -0.3
110,341 - CA264_21230 0.34 +0.9
110,341 - CA264_21230 0.34 -0.3
110,341 - CA264_21230 0.34 -0.3
110,343 + CA264_21230 0.34 -0.1
110,354 - CA264_21230 0.36 +1.0
110,354 - CA264_21230 0.36 -0.5
110,369 - CA264_21230 0.38 +0.0
110,369 - CA264_21230 0.38 +0.0
110,381 + CA264_21230 0.40 +0.2
110,381 + CA264_21230 0.40 -0.3
110,382 - CA264_21230 0.41 -1.1
110,386 + CA264_21230 0.41 +0.7
110,415 + CA264_21230 0.46 -0.5
110,415 + CA264_21230 0.46 -1.6
110,495 - CA264_21230 0.59 +0.1
110,495 - CA264_21230 0.59 +1.7
110,495 - CA264_21230 0.59 +0.1
110,495 - CA264_21230 0.59 -0.3
110,523 - CA264_21230 0.64 +0.6
110,550 + CA264_21230 0.68 -2.2
110,574 - CA264_21230 0.72 +0.4
110,680 - -1.5
110,700 - -0.0

Or see this region's nucleotide sequence