Experiment: m.b. benzoic 0.4 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_21210 and CA264_21215 overlap by 4 nucleotides CA264_21215 and CA264_21220 are separated by 165 nucleotides CA264_21220 and CA264_21225 overlap by 11 nucleotides CA264_21225 and CA264_21230 overlap by 4 nucleotides
CA264_21210: CA264_21210 - SOS mutagenesis and repair protein UmuC, at 107,057 to 108,325
_21210
CA264_21215: CA264_21215 - DNA polymerase V, at 108,322 to 108,777
_21215
CA264_21220: CA264_21220 - hypothetical protein, at 108,943 to 109,728
_21220
CA264_21225: CA264_21225 - hypothetical protein, at 109,718 to 110,140
_21225
CA264_21230: CA264_21230 - hypothetical protein, at 110,137 to 110,739
_21230
Position (kb)
108
109
110 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 107.974 kb on + strand, within CA264_21210 at 107.975 kb on - strand, within CA264_21210 at 107.978 kb on + strand, within CA264_21210 at 107.978 kb on + strand, within CA264_21210 at 107.997 kb on - strand, within CA264_21210 at 108.086 kb on + strand, within CA264_21210 at 108.086 kb on + strand, within CA264_21210 at 108.086 kb on + strand, within CA264_21210 at 108.087 kb on - strand, within CA264_21210 at 108.087 kb on - strand, within CA264_21210 at 108.089 kb on - strand, within CA264_21210 at 108.089 kb on - strand, within CA264_21210 at 108.106 kb on + strand, within CA264_21210 at 108.106 kb on + strand, within CA264_21210 at 108.106 kb on + strand, within CA264_21210 at 108.107 kb on - strand, within CA264_21210 at 108.107 kb on - strand, within CA264_21210 at 108.107 kb on - strand, within CA264_21210 at 108.111 kb on + strand, within CA264_21210 at 108.112 kb on - strand, within CA264_21210 at 108.116 kb on + strand, within CA264_21210 at 108.116 kb on + strand, within CA264_21210 at 108.122 kb on - strand, within CA264_21210 at 108.122 kb on - strand, within CA264_21210 at 108.124 kb on - strand, within CA264_21210 at 108.124 kb on - strand, within CA264_21210 at 108.131 kb on + strand, within CA264_21210 at 108.131 kb on + strand, within CA264_21210 at 108.133 kb on + strand, within CA264_21210 at 108.134 kb on - strand, within CA264_21210 at 108.200 kb on - strand at 108.233 kb on + strand at 108.252 kb on - strand at 108.286 kb on - strand at 108.293 kb on - strand at 108.302 kb on + strand at 108.303 kb on - strand at 108.303 kb on - strand at 108.319 kb on + strand at 108.343 kb on + strand at 108.412 kb on - strand, within CA264_21215 at 108.467 kb on + strand, within CA264_21215 at 108.468 kb on - strand, within CA264_21215 at 108.557 kb on + strand, within CA264_21215 at 108.558 kb on - strand, within CA264_21215 at 108.558 kb on - strand, within CA264_21215 at 108.567 kb on + strand, within CA264_21215 at 108.567 kb on + strand, within CA264_21215 at 108.568 kb on - strand, within CA264_21215 at 108.568 kb on - strand, within CA264_21215 at 108.568 kb on - strand, within CA264_21215 at 108.568 kb on - strand, within CA264_21215 at 108.568 kb on - strand, within CA264_21215 at 108.580 kb on + strand, within CA264_21215 at 108.590 kb on + strand, within CA264_21215 at 108.590 kb on + strand, within CA264_21215 at 108.591 kb on - strand, within CA264_21215 at 108.628 kb on + strand, within CA264_21215 at 108.628 kb on + strand, within CA264_21215 at 108.628 kb on + strand, within CA264_21215 at 108.629 kb on - strand, within CA264_21215 at 108.633 kb on + strand, within CA264_21215 at 108.634 kb on - strand, within CA264_21215 at 108.640 kb on - strand, within CA264_21215 at 108.760 kb on + strand at 108.760 kb on + strand at 108.760 kb on + strand at 108.761 kb on - strand at 108.842 kb on - strand at 108.886 kb on + strand at 108.895 kb on - strand at 108.908 kb on - strand at 108.908 kb on - strand at 108.908 kb on - strand at 108.908 kb on - strand at 108.957 kb on + strand at 108.958 kb on - strand at 108.964 kb on + strand at 108.964 kb on + strand at 108.964 kb on + strand at 108.984 kb on + strand at 108.999 kb on - strand at 109.053 kb on + strand, within CA264_21220 at 109.055 kb on + strand, within CA264_21220 at 109.055 kb on + strand, within CA264_21220 at 109.055 kb on + strand, within CA264_21220 at 109.057 kb on + strand, within CA264_21220 at 109.057 kb on + strand, within CA264_21220 at 109.058 kb on - strand, within CA264_21220 at 109.058 kb on - strand, within CA264_21220 at 109.058 kb on - strand, within CA264_21220 at 109.058 kb on - strand, within CA264_21220 at 109.081 kb on + strand, within CA264_21220 at 109.093 kb on - strand, within CA264_21220 at 109.140 kb on + strand, within CA264_21220 at 109.145 kb on + strand, within CA264_21220 at 109.168 kb on - strand, within CA264_21220 at 109.168 kb on - strand, within CA264_21220 at 109.176 kb on - strand, within CA264_21220 at 109.209 kb on + strand, within CA264_21220 at 109.209 kb on + strand, within CA264_21220 at 109.225 kb on + strand, within CA264_21220 at 109.225 kb on + strand, within CA264_21220 at 109.225 kb on + strand, within CA264_21220 at 109.225 kb on + strand, within CA264_21220 at 109.225 kb on + strand, within CA264_21220 at 109.226 kb on - strand, within CA264_21220 at 109.256 kb on - strand, within CA264_21220 at 109.279 kb on + strand, within CA264_21220 at 109.280 kb on - strand, within CA264_21220 at 109.332 kb on + strand, within CA264_21220 at 109.333 kb on - strand, within CA264_21220 at 109.343 kb on + strand, within CA264_21220 at 109.343 kb on + strand, within CA264_21220 at 109.344 kb on - strand, within CA264_21220 at 109.387 kb on - strand, within CA264_21220 at 109.413 kb on + strand, within CA264_21220 at 109.413 kb on + strand, within CA264_21220 at 109.413 kb on + strand, within CA264_21220 at 109.413 kb on + strand, within CA264_21220 at 109.414 kb on - strand, within CA264_21220 at 109.415 kb on + strand, within CA264_21220 at 109.427 kb on - strand, within CA264_21220 at 109.433 kb on + strand, within CA264_21220 at 109.433 kb on + strand, within CA264_21220 at 109.441 kb on - strand, within CA264_21220 at 109.447 kb on + strand, within CA264_21220 at 109.460 kb on - strand, within CA264_21220 at 109.478 kb on + strand, within CA264_21220 at 109.479 kb on - strand, within CA264_21220 at 109.546 kb on + strand, within CA264_21220 at 109.547 kb on - strand, within CA264_21220 at 109.547 kb on - strand, within CA264_21220 at 109.552 kb on - strand, within CA264_21220 at 109.610 kb on + strand, within CA264_21220 at 109.611 kb on - strand, within CA264_21220 at 109.611 kb on - strand, within CA264_21220 at 109.631 kb on - strand, within CA264_21220 at 109.631 kb on - strand, within CA264_21220 at 109.631 kb on - strand, within CA264_21220 at 109.631 kb on - strand, within CA264_21220 at 109.631 kb on - strand, within CA264_21220 at 109.631 kb on - strand, within CA264_21220 at 109.632 kb on + strand, within CA264_21220 at 109.681 kb on + strand at 109.684 kb on + strand at 109.931 kb on - strand, within CA264_21225 at 109.952 kb on - strand, within CA264_21225 at 110.141 kb on - strand at 110.141 kb on - strand at 110.176 kb on - strand at 110.190 kb on + strand at 110.337 kb on + strand, within CA264_21230 at 110.338 kb on - strand, within CA264_21230 at 110.340 kb on + strand, within CA264_21230 at 110.340 kb on + strand, within CA264_21230 at 110.341 kb on - strand, within CA264_21230 at 110.341 kb on - strand, within CA264_21230 at 110.341 kb on - strand, within CA264_21230 at 110.341 kb on - strand, within CA264_21230 at 110.343 kb on + strand, within CA264_21230 at 110.354 kb on - strand, within CA264_21230 at 110.354 kb on - strand, within CA264_21230 at 110.369 kb on - strand, within CA264_21230 at 110.369 kb on - strand, within CA264_21230 at 110.381 kb on + strand, within CA264_21230 at 110.381 kb on + strand, within CA264_21230 at 110.382 kb on - strand, within CA264_21230 at 110.386 kb on + strand, within CA264_21230 at 110.415 kb on + strand, within CA264_21230 at 110.415 kb on + strand, within CA264_21230 at 110.495 kb on - strand, within CA264_21230 at 110.495 kb on - strand, within CA264_21230 at 110.495 kb on - strand, within CA264_21230 at 110.495 kb on - strand, within CA264_21230 at 110.523 kb on - strand, within CA264_21230 at 110.550 kb on + strand, within CA264_21230 at 110.574 kb on - strand, within CA264_21230 at 110.680 kb on - strand at 110.700 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. benzoic 0.4 mg/ml remove 107,974 + CA264_21210 0.72 -1.9 107,975 - CA264_21210 0.72 -0.4 107,978 + CA264_21210 0.73 -0.4 107,978 + CA264_21210 0.73 +2.2 107,997 - CA264_21210 0.74 +0.2 108,086 + CA264_21210 0.81 +0.4 108,086 + CA264_21210 0.81 -0.0 108,086 + CA264_21210 0.81 +0.6 108,087 - CA264_21210 0.81 -1.6 108,087 - CA264_21210 0.81 -0.1 108,089 - CA264_21210 0.81 +0.1 108,089 - CA264_21210 0.81 -0.3 108,106 + CA264_21210 0.83 +0.3 108,106 + CA264_21210 0.83 -0.3 108,106 + CA264_21210 0.83 +0.5 108,107 - CA264_21210 0.83 +0.1 108,107 - CA264_21210 0.83 +0.3 108,107 - CA264_21210 0.83 -0.4 108,111 + CA264_21210 0.83 +0.4 108,112 - CA264_21210 0.83 -0.5 108,116 + CA264_21210 0.83 -0.0 108,116 + CA264_21210 0.83 +0.3 108,122 - CA264_21210 0.84 -0.7 108,122 - CA264_21210 0.84 -0.6 108,124 - CA264_21210 0.84 +0.1 108,124 - CA264_21210 0.84 +2.8 108,131 + CA264_21210 0.85 -0.4 108,131 + CA264_21210 0.85 -1.3 108,133 + CA264_21210 0.85 -0.9 108,134 - CA264_21210 0.85 +0.6 108,200 - +1.0 108,233 + -0.6 108,252 - -0.3 108,286 - +1.8 108,293 - -0.1 108,302 + -0.3 108,303 - +1.7 108,303 - +0.0 108,319 + -1.0 108,343 + +2.0 108,412 - CA264_21215 0.20 +0.5 108,467 + CA264_21215 0.32 -0.7 108,468 - CA264_21215 0.32 +0.7 108,557 + CA264_21215 0.52 +0.8 108,558 - CA264_21215 0.52 -0.2 108,558 - CA264_21215 0.52 -0.8 108,567 + CA264_21215 0.54 -0.8 108,567 + CA264_21215 0.54 +0.4 108,568 - CA264_21215 0.54 -0.1 108,568 - CA264_21215 0.54 +0.7 108,568 - CA264_21215 0.54 -0.7 108,568 - CA264_21215 0.54 -0.8 108,568 - CA264_21215 0.54 +0.1 108,580 + CA264_21215 0.57 +1.4 108,590 + CA264_21215 0.59 +0.1 108,590 + CA264_21215 0.59 -0.1 108,591 - CA264_21215 0.59 +0.1 108,628 + CA264_21215 0.67 -0.3 108,628 + CA264_21215 0.67 -0.1 108,628 + CA264_21215 0.67 +0.4 108,629 - CA264_21215 0.67 -0.2 108,633 + CA264_21215 0.68 +0.7 108,634 - CA264_21215 0.68 +2.2 108,640 - CA264_21215 0.70 -0.0 108,760 + +1.2 108,760 + -0.6 108,760 + -0.8 108,761 - -0.0 108,842 - -0.7 108,886 + +0.8 108,895 - -1.0 108,908 - +0.2 108,908 - +0.4 108,908 - -0.6 108,908 - +0.9 108,957 + +0.8 108,958 - -0.3 108,964 + +0.3 108,964 + +0.7 108,964 + +0.1 108,984 + +0.7 108,999 - +1.2 109,053 + CA264_21220 0.14 +1.8 109,055 + CA264_21220 0.14 -0.2 109,055 + CA264_21220 0.14 +0.4 109,055 + CA264_21220 0.14 -0.4 109,057 + CA264_21220 0.15 +1.0 109,057 + CA264_21220 0.15 +0.4 109,058 - CA264_21220 0.15 -0.8 109,058 - CA264_21220 0.15 -1.1 109,058 - CA264_21220 0.15 +0.4 109,058 - CA264_21220 0.15 -1.2 109,081 + CA264_21220 0.18 -0.8 109,093 - CA264_21220 0.19 +0.1 109,140 + CA264_21220 0.25 +0.1 109,145 + CA264_21220 0.26 +1.2 109,168 - CA264_21220 0.29 -0.2 109,168 - CA264_21220 0.29 +1.5 109,176 - CA264_21220 0.30 -0.0 109,209 + CA264_21220 0.34 -1.1 109,209 + CA264_21220 0.34 +0.7 109,225 + CA264_21220 0.36 +1.0 109,225 + CA264_21220 0.36 +0.0 109,225 + CA264_21220 0.36 +0.0 109,225 + CA264_21220 0.36 +2.0 109,225 + CA264_21220 0.36 +0.2 109,226 - CA264_21220 0.36 -0.6 109,256 - CA264_21220 0.40 -2.2 109,279 + CA264_21220 0.43 -0.3 109,280 - CA264_21220 0.43 +0.8 109,332 + CA264_21220 0.49 +0.2 109,333 - CA264_21220 0.50 -0.3 109,343 + CA264_21220 0.51 +0.4 109,343 + CA264_21220 0.51 +1.2 109,344 - CA264_21220 0.51 +0.2 109,387 - CA264_21220 0.56 -0.0 109,413 + CA264_21220 0.60 +3.0 109,413 + CA264_21220 0.60 +0.3 109,413 + CA264_21220 0.60 +0.7 109,413 + CA264_21220 0.60 +0.1 109,414 - CA264_21220 0.60 +0.6 109,415 + CA264_21220 0.60 +0.1 109,427 - CA264_21220 0.62 +0.1 109,433 + CA264_21220 0.62 -1.0 109,433 + CA264_21220 0.62 +0.5 109,441 - CA264_21220 0.63 -0.0 109,447 + CA264_21220 0.64 -0.7 109,460 - CA264_21220 0.66 +2.2 109,478 + CA264_21220 0.68 +0.8 109,479 - CA264_21220 0.68 -0.6 109,546 + CA264_21220 0.77 +0.2 109,547 - CA264_21220 0.77 +0.0 109,547 - CA264_21220 0.77 +0.5 109,552 - CA264_21220 0.77 +0.4 109,610 + CA264_21220 0.85 +0.6 109,611 - CA264_21220 0.85 +0.2 109,611 - CA264_21220 0.85 +0.8 109,631 - CA264_21220 0.88 -0.1 109,631 - CA264_21220 0.88 -0.5 109,631 - CA264_21220 0.88 +1.0 109,631 - CA264_21220 0.88 +0.2 109,631 - CA264_21220 0.88 +0.4 109,631 - CA264_21220 0.88 -0.2 109,632 + CA264_21220 0.88 +0.5 109,681 + -0.1 109,684 + -0.1 109,931 - CA264_21225 0.50 -0.3 109,952 - CA264_21225 0.55 -0.7 110,141 - -0.3 110,141 - +0.4 110,176 - +1.8 110,190 + -1.2 110,337 + CA264_21230 0.33 +0.2 110,338 - CA264_21230 0.33 +0.3 110,340 + CA264_21230 0.34 -0.3 110,340 + CA264_21230 0.34 -0.7 110,341 - CA264_21230 0.34 -0.3 110,341 - CA264_21230 0.34 +0.9 110,341 - CA264_21230 0.34 -0.3 110,341 - CA264_21230 0.34 -0.3 110,343 + CA264_21230 0.34 -0.1 110,354 - CA264_21230 0.36 +1.0 110,354 - CA264_21230 0.36 -0.5 110,369 - CA264_21230 0.38 +0.0 110,369 - CA264_21230 0.38 +0.0 110,381 + CA264_21230 0.40 +0.2 110,381 + CA264_21230 0.40 -0.3 110,382 - CA264_21230 0.41 -1.1 110,386 + CA264_21230 0.41 +0.7 110,415 + CA264_21230 0.46 -0.5 110,415 + CA264_21230 0.46 -1.6 110,495 - CA264_21230 0.59 +0.1 110,495 - CA264_21230 0.59 +1.7 110,495 - CA264_21230 0.59 +0.1 110,495 - CA264_21230 0.59 -0.3 110,523 - CA264_21230 0.64 +0.6 110,550 + CA264_21230 0.68 -2.2 110,574 - CA264_21230 0.72 +0.4 110,680 - -1.5 110,700 - -0.0
Or see this region's nucleotide sequence