Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_18420

Experiment: m.b. benzoic 0.4 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_18415 and CA264_18420 are separated by 421 nucleotidesCA264_18420 and CA264_18425 are separated by 173 nucleotides CA264_18415: CA264_18415 - alanine dehydrogenase, at 4,284,099 to 4,285,343 _18415 CA264_18420: CA264_18420 - hypothetical protein, at 4,285,765 to 4,286,028 _18420 CA264_18425: CA264_18425 - 16S ribosomal RNA, at 4,286,202 to 4,287,722 _18425 Position (kb) 4285 4286 4287Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4284.812 kb on - strand, within CA264_18415at 4284.847 kb on + strand, within CA264_18415at 4284.847 kb on + strand, within CA264_18415at 4284.847 kb on + strand, within CA264_18415at 4284.847 kb on + strand, within CA264_18415at 4284.847 kb on + strand, within CA264_18415at 4284.848 kb on - strand, within CA264_18415at 4284.848 kb on - strand, within CA264_18415at 4284.849 kb on + strand, within CA264_18415at 4284.850 kb on - strand, within CA264_18415at 4284.851 kb on + strand, within CA264_18415at 4284.851 kb on + strand, within CA264_18415at 4284.851 kb on + strand, within CA264_18415at 4284.852 kb on - strand, within CA264_18415at 4284.852 kb on - strand, within CA264_18415at 4284.852 kb on - strand, within CA264_18415at 4284.857 kb on + strand, within CA264_18415at 4284.858 kb on - strand, within CA264_18415at 4285.010 kb on + strand, within CA264_18415at 4285.010 kb on + strand, within CA264_18415at 4285.011 kb on - strand, within CA264_18415at 4285.184 kb on + strand, within CA264_18415at 4285.186 kb on + strand, within CA264_18415at 4285.186 kb on + strand, within CA264_18415at 4285.187 kb on - strand, within CA264_18415at 4285.187 kb on - strand, within CA264_18415at 4285.190 kb on + strand, within CA264_18415at 4285.191 kb on - strand, within CA264_18415at 4285.191 kb on - strand, within CA264_18415at 4285.191 kb on - strand, within CA264_18415at 4285.191 kb on - strand, within CA264_18415at 4285.229 kb on + strandat 4285.285 kb on - strandat 4285.285 kb on - strandat 4285.297 kb on - strandat 4285.319 kb on + strandat 4285.339 kb on + strandat 4285.345 kb on - strandat 4285.345 kb on - strandat 4285.345 kb on - strandat 4285.345 kb on - strandat 4285.345 kb on - strandat 4285.345 kb on - strandat 4285.347 kb on - strandat 4285.347 kb on - strandat 4285.347 kb on - strandat 4285.347 kb on - strandat 4285.347 kb on - strandat 4285.350 kb on - strandat 4285.350 kb on - strandat 4285.352 kb on - strandat 4285.355 kb on - strandat 4285.360 kb on - strandat 4285.362 kb on - strandat 4285.362 kb on - strandat 4285.365 kb on - strandat 4285.365 kb on - strandat 4285.367 kb on - strandat 4285.367 kb on - strandat 4285.372 kb on - strandat 4285.372 kb on - strandat 4285.375 kb on - strandat 4285.375 kb on - strandat 4285.386 kb on + strandat 4285.394 kb on + strandat 4285.396 kb on + strandat 4285.396 kb on + strandat 4285.396 kb on + strandat 4285.396 kb on + strandat 4285.396 kb on + strandat 4285.396 kb on + strandat 4285.399 kb on + strandat 4285.399 kb on + strandat 4285.399 kb on + strandat 4285.401 kb on + strandat 4285.401 kb on + strandat 4285.404 kb on + strandat 4285.404 kb on + strandat 4285.406 kb on + strandat 4285.406 kb on + strandat 4285.409 kb on + strandat 4285.411 kb on + strandat 4285.411 kb on + strandat 4285.411 kb on + strandat 4285.411 kb on + strandat 4285.414 kb on + strandat 4285.414 kb on + strandat 4285.416 kb on + strandat 4285.416 kb on + strandat 4285.419 kb on + strandat 4285.436 kb on + strandat 4285.436 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. benzoic 0.4 mg/ml
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4,284,812 - CA264_18415 0.57 +0.4
4,284,847 + CA264_18415 0.60 -0.1
4,284,847 + CA264_18415 0.60 -2.2
4,284,847 + CA264_18415 0.60 +0.7
4,284,847 + CA264_18415 0.60 +0.6
4,284,847 + CA264_18415 0.60 +0.1
4,284,848 - CA264_18415 0.60 +0.8
4,284,848 - CA264_18415 0.60 -0.1
4,284,849 + CA264_18415 0.60 +0.0
4,284,850 - CA264_18415 0.60 +0.2
4,284,851 + CA264_18415 0.60 -2.5
4,284,851 + CA264_18415 0.60 -0.3
4,284,851 + CA264_18415 0.60 +1.5
4,284,852 - CA264_18415 0.60 +0.7
4,284,852 - CA264_18415 0.60 +1.2
4,284,852 - CA264_18415 0.60 -0.2
4,284,857 + CA264_18415 0.61 -0.2
4,284,858 - CA264_18415 0.61 -1.3
4,285,010 + CA264_18415 0.73 -0.9
4,285,010 + CA264_18415 0.73 -0.2
4,285,011 - CA264_18415 0.73 -2.1
4,285,184 + CA264_18415 0.87 +1.2
4,285,186 + CA264_18415 0.87 -1.1
4,285,186 + CA264_18415 0.87 +1.1
4,285,187 - CA264_18415 0.87 -0.5
4,285,187 - CA264_18415 0.87 -0.3
4,285,190 + CA264_18415 0.88 +0.6
4,285,191 - CA264_18415 0.88 +0.4
4,285,191 - CA264_18415 0.88 +1.2
4,285,191 - CA264_18415 0.88 -0.4
4,285,191 - CA264_18415 0.88 -0.8
4,285,229 + +0.2
4,285,285 - +0.0
4,285,285 - +0.2
4,285,297 - +0.7
4,285,319 + -0.4
4,285,339 + -0.2
4,285,345 - +0.1
4,285,345 - +0.2
4,285,345 - +0.4
4,285,345 - +0.2
4,285,345 - -1.8
4,285,345 - +0.5
4,285,347 - +1.0
4,285,347 - -1.1
4,285,347 - -1.0
4,285,347 - -0.6
4,285,347 - +0.1
4,285,350 - -0.1
4,285,350 - -1.1
4,285,352 - +0.1
4,285,355 - +0.1
4,285,360 - +1.6
4,285,362 - -0.3
4,285,362 - +0.1
4,285,365 - +0.1
4,285,365 - +0.3
4,285,367 - +0.7
4,285,367 - -0.7
4,285,372 - +0.7
4,285,372 - -0.7
4,285,375 - -0.9
4,285,375 - +0.5
4,285,386 + +0.2
4,285,394 + -0.2
4,285,396 + +0.2
4,285,396 + -0.6
4,285,396 + +0.4
4,285,396 + +0.1
4,285,396 + +0.0
4,285,396 + -0.6
4,285,399 + -0.4
4,285,399 + -0.3
4,285,399 + -1.3
4,285,401 + +1.2
4,285,401 + -1.1
4,285,404 + -0.3
4,285,404 + +0.2
4,285,406 + -1.3
4,285,406 + +0.7
4,285,409 + -0.3
4,285,411 + -0.5
4,285,411 + -0.2
4,285,411 + -1.6
4,285,411 + -0.3
4,285,414 + +0.2
4,285,414 + +1.2
4,285,416 + -1.1
4,285,416 + +0.2
4,285,419 + +2.8
4,285,436 + -0.0
4,285,436 + +0.2

Or see this region's nucleotide sequence