Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_16070

Experiment: m.b. benzoic 0.4 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA264_16060 and CA264_16065 are separated by 102 nucleotidesCA264_16065 and CA264_16070 are separated by 45 nucleotidesCA264_16070 and CA264_16075 are separated by 61 nucleotidesCA264_16075 and CA264_16080 are separated by 138 nucleotidesCA264_16080 and CA264_16085 are separated by 119 nucleotides CA264_16060: CA264_16060 - hypothetical protein, at 3,744,467 to 3,745,000 _16060 CA264_16065: CA264_16065 - hypothetical protein, at 3,745,103 to 3,745,747 _16065 CA264_16070: CA264_16070 - hypothetical protein, at 3,745,793 to 3,746,050 _16070 CA264_16075: CA264_16075 - hypothetical protein, at 3,746,112 to 3,746,375 _16075 CA264_16080: CA264_16080 - hypothetical protein, at 3,746,514 to 3,746,870 _16080 CA264_16085: CA264_16085 - death-on-curing protein, at 3,746,990 to 3,747,418 _16085 Position (kb) 3745 3746 3747Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3744.951 kb on - strandat 3744.951 kb on - strandat 3744.972 kb on + strandat 3744.982 kb on + strandat 3744.994 kb on + strandat 3745.001 kb on + strandat 3745.005 kb on + strandat 3745.006 kb on - strandat 3745.006 kb on - strandat 3745.006 kb on - strandat 3745.062 kb on + strandat 3745.062 kb on + strandat 3745.077 kb on + strandat 3745.089 kb on + strandat 3745.090 kb on - strandat 3745.107 kb on + strandat 3745.113 kb on + strandat 3745.116 kb on + strandat 3745.117 kb on - strandat 3745.117 kb on - strandat 3745.117 kb on - strandat 3745.143 kb on - strandat 3745.175 kb on - strand, within CA264_16065at 3745.208 kb on + strand, within CA264_16065at 3745.208 kb on + strand, within CA264_16065at 3745.208 kb on + strand, within CA264_16065at 3745.209 kb on - strand, within CA264_16065at 3745.209 kb on - strand, within CA264_16065at 3745.358 kb on - strand, within CA264_16065at 3745.358 kb on - strand, within CA264_16065at 3745.358 kb on - strand, within CA264_16065at 3745.358 kb on - strand, within CA264_16065at 3745.358 kb on - strand, within CA264_16065at 3745.410 kb on + strand, within CA264_16065at 3745.530 kb on - strand, within CA264_16065at 3745.582 kb on + strand, within CA264_16065at 3745.583 kb on - strand, within CA264_16065at 3745.745 kb on + strandat 3745.760 kb on + strandat 3745.760 kb on + strandat 3745.761 kb on - strandat 3745.764 kb on + strandat 3745.765 kb on - strandat 3745.812 kb on - strandat 3745.831 kb on - strand, within CA264_16070at 3745.930 kb on - strand, within CA264_16070at 3745.943 kb on - strand, within CA264_16070at 3745.944 kb on + strand, within CA264_16070at 3745.944 kb on + strand, within CA264_16070at 3745.945 kb on - strand, within CA264_16070at 3745.950 kb on - strand, within CA264_16070at 3745.951 kb on + strand, within CA264_16070at 3745.951 kb on + strand, within CA264_16070at 3745.951 kb on + strand, within CA264_16070at 3745.952 kb on - strand, within CA264_16070at 3745.988 kb on - strand, within CA264_16070at 3746.007 kb on + strand, within CA264_16070at 3746.007 kb on + strand, within CA264_16070at 3746.008 kb on - strand, within CA264_16070at 3746.008 kb on - strand, within CA264_16070at 3746.011 kb on + strand, within CA264_16070at 3746.011 kb on + strand, within CA264_16070at 3746.048 kb on + strandat 3746.049 kb on - strandat 3746.104 kb on + strandat 3746.105 kb on - strandat 3746.129 kb on + strandat 3746.129 kb on + strandat 3746.137 kb on + strandat 3746.137 kb on + strandat 3746.157 kb on + strand, within CA264_16075at 3746.161 kb on + strand, within CA264_16075at 3746.161 kb on + strand, within CA264_16075at 3746.161 kb on + strand, within CA264_16075at 3746.162 kb on - strand, within CA264_16075at 3746.162 kb on - strand, within CA264_16075at 3746.162 kb on - strand, within CA264_16075at 3746.162 kb on - strand, within CA264_16075at 3746.162 kb on - strand, within CA264_16075at 3746.182 kb on + strand, within CA264_16075at 3746.207 kb on - strand, within CA264_16075at 3746.262 kb on - strand, within CA264_16075at 3746.275 kb on + strand, within CA264_16075at 3746.276 kb on - strand, within CA264_16075at 3746.276 kb on - strand, within CA264_16075at 3746.339 kb on - strand, within CA264_16075at 3746.340 kb on + strand, within CA264_16075at 3746.341 kb on - strand, within CA264_16075at 3746.412 kb on - strandat 3746.437 kb on - strandat 3746.458 kb on - strandat 3746.458 kb on - strandat 3746.458 kb on - strandat 3746.500 kb on + strandat 3746.542 kb on + strandat 3746.542 kb on + strandat 3746.576 kb on + strand, within CA264_16080at 3746.617 kb on + strand, within CA264_16080at 3746.627 kb on + strand, within CA264_16080at 3746.633 kb on + strand, within CA264_16080at 3746.634 kb on - strand, within CA264_16080at 3746.662 kb on - strand, within CA264_16080at 3746.685 kb on + strand, within CA264_16080at 3746.685 kb on + strand, within CA264_16080at 3746.686 kb on - strand, within CA264_16080at 3746.686 kb on - strand, within CA264_16080at 3746.686 kb on - strand, within CA264_16080at 3746.688 kb on - strand, within CA264_16080at 3746.717 kb on + strand, within CA264_16080at 3746.750 kb on - strand, within CA264_16080at 3746.768 kb on + strand, within CA264_16080at 3746.769 kb on - strand, within CA264_16080at 3746.771 kb on - strand, within CA264_16080at 3746.771 kb on - strand, within CA264_16080at 3746.771 kb on - strand, within CA264_16080at 3746.771 kb on - strand, within CA264_16080at 3746.777 kb on - strand, within CA264_16080at 3746.783 kb on - strand, within CA264_16080at 3746.842 kb on + strandat 3746.858 kb on + strandat 3746.900 kb on + strandat 3746.900 kb on + strandat 3746.901 kb on - strandat 3746.934 kb on + strandat 3746.934 kb on + strandat 3746.935 kb on - strandat 3746.936 kb on + strandat 3746.937 kb on - strandat 3746.960 kb on + strandat 3746.961 kb on - strandat 3746.986 kb on + strandat 3746.987 kb on - strandat 3747.031 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. benzoic 0.4 mg/ml
remove
3,744,951 - +0.3
3,744,951 - -0.1
3,744,972 + -0.6
3,744,982 + +0.9
3,744,994 + -1.0
3,745,001 + -0.4
3,745,005 + -0.2
3,745,006 - -1.0
3,745,006 - +0.5
3,745,006 - -1.4
3,745,062 + +0.0
3,745,062 + +0.7
3,745,077 + -0.8
3,745,089 + +0.5
3,745,090 - -0.7
3,745,107 + -0.5
3,745,113 + +0.1
3,745,116 + +0.2
3,745,117 - -0.4
3,745,117 - -0.3
3,745,117 - +0.8
3,745,143 - +1.1
3,745,175 - CA264_16065 0.11 +0.2
3,745,208 + CA264_16065 0.16 -0.3
3,745,208 + CA264_16065 0.16 +0.4
3,745,208 + CA264_16065 0.16 -1.0
3,745,209 - CA264_16065 0.16 +0.4
3,745,209 - CA264_16065 0.16 -0.8
3,745,358 - CA264_16065 0.40 -0.1
3,745,358 - CA264_16065 0.40 +0.3
3,745,358 - CA264_16065 0.40 +1.5
3,745,358 - CA264_16065 0.40 -0.8
3,745,358 - CA264_16065 0.40 -0.6
3,745,410 + CA264_16065 0.48 +0.2
3,745,530 - CA264_16065 0.66 -0.3
3,745,582 + CA264_16065 0.74 -0.1
3,745,583 - CA264_16065 0.74 -1.4
3,745,745 + -0.2
3,745,760 + +0.1
3,745,760 + +0.7
3,745,761 - -0.4
3,745,764 + -1.5
3,745,765 - +0.7
3,745,812 - +0.2
3,745,831 - CA264_16070 0.15 +2.2
3,745,930 - CA264_16070 0.53 -0.3
3,745,943 - CA264_16070 0.58 +1.1
3,745,944 + CA264_16070 0.59 -0.2
3,745,944 + CA264_16070 0.59 +0.3
3,745,945 - CA264_16070 0.59 -1.1
3,745,950 - CA264_16070 0.61 -0.3
3,745,951 + CA264_16070 0.61 -0.3
3,745,951 + CA264_16070 0.61 -1.8
3,745,951 + CA264_16070 0.61 -0.7
3,745,952 - CA264_16070 0.62 -0.4
3,745,988 - CA264_16070 0.76 -1.5
3,746,007 + CA264_16070 0.83 +1.2
3,746,007 + CA264_16070 0.83 -0.6
3,746,008 - CA264_16070 0.83 -1.1
3,746,008 - CA264_16070 0.83 +0.4
3,746,011 + CA264_16070 0.84 -1.3
3,746,011 + CA264_16070 0.84 -1.3
3,746,048 + +0.3
3,746,049 - -0.4
3,746,104 + -0.3
3,746,105 - -0.9
3,746,129 + +1.2
3,746,129 + -0.5
3,746,137 + -0.6
3,746,137 + -0.7
3,746,157 + CA264_16075 0.17 -0.4
3,746,161 + CA264_16075 0.19 -0.6
3,746,161 + CA264_16075 0.19 -0.3
3,746,161 + CA264_16075 0.19 -0.6
3,746,162 - CA264_16075 0.19 -1.3
3,746,162 - CA264_16075 0.19 -0.7
3,746,162 - CA264_16075 0.19 -2.1
3,746,162 - CA264_16075 0.19 +0.1
3,746,162 - CA264_16075 0.19 -1.3
3,746,182 + CA264_16075 0.27 -0.1
3,746,207 - CA264_16075 0.36 +0.7
3,746,262 - CA264_16075 0.57 -2.1
3,746,275 + CA264_16075 0.62 +1.8
3,746,276 - CA264_16075 0.62 +0.0
3,746,276 - CA264_16075 0.62 -0.2
3,746,339 - CA264_16075 0.86 -0.4
3,746,340 + CA264_16075 0.86 -1.2
3,746,341 - CA264_16075 0.87 +0.7
3,746,412 - -0.8
3,746,437 - -0.8
3,746,458 - -0.8
3,746,458 - +0.1
3,746,458 - +2.8
3,746,500 + -1.1
3,746,542 + -0.3
3,746,542 + +0.8
3,746,576 + CA264_16080 0.17 +0.4
3,746,617 + CA264_16080 0.29 -0.3
3,746,627 + CA264_16080 0.32 -0.1
3,746,633 + CA264_16080 0.33 +1.1
3,746,634 - CA264_16080 0.34 +0.0
3,746,662 - CA264_16080 0.41 -1.3
3,746,685 + CA264_16080 0.48 +0.2
3,746,685 + CA264_16080 0.48 +1.2
3,746,686 - CA264_16080 0.48 -0.1
3,746,686 - CA264_16080 0.48 -0.4
3,746,686 - CA264_16080 0.48 +0.1
3,746,688 - CA264_16080 0.49 -0.7
3,746,717 + CA264_16080 0.57 -0.4
3,746,750 - CA264_16080 0.66 +1.2
3,746,768 + CA264_16080 0.71 -0.8
3,746,769 - CA264_16080 0.71 -0.1
3,746,771 - CA264_16080 0.72 -0.3
3,746,771 - CA264_16080 0.72 -0.3
3,746,771 - CA264_16080 0.72 +0.2
3,746,771 - CA264_16080 0.72 -0.2
3,746,777 - CA264_16080 0.74 +0.1
3,746,783 - CA264_16080 0.75 -1.6
3,746,842 + +0.1
3,746,858 + +0.2
3,746,900 + +0.0
3,746,900 + +0.8
3,746,901 - +0.3
3,746,934 + +0.2
3,746,934 + +0.4
3,746,935 - -0.6
3,746,936 + +0.1
3,746,937 - -0.3
3,746,960 + -1.0
3,746,961 - +0.5
3,746,986 + +1.0
3,746,987 - +0.4
3,747,031 + -1.3

Or see this region's nucleotide sequence