Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_15645

Experiment: m.b. benzoic 0.4 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_15640 and CA264_15645 are separated by 233 nucleotidesCA264_15645 and CA264_15650 are separated by 123 nucleotidesCA264_15650 and CA264_15655 are separated by 113 nucleotidesCA264_15655 and CA264_15660 are separated by 134 nucleotides CA264_15640: CA264_15640 - hypothetical protein, at 3,655,582 to 3,656,283 _15640 CA264_15645: CA264_15645 - ornithine--oxo-acid transaminase, at 3,656,517 to 3,657,758 _15645 CA264_15650: CA264_15650 - hypothetical protein, at 3,657,882 to 3,658,187 _15650 CA264_15655: CA264_15655 - hypothetical protein, at 3,658,301 to 3,658,504 _15655 CA264_15660: CA264_15660 - 50S ribosomal protein L28, at 3,658,639 to 3,658,878 _15660 Position (kb) 3656 3657 3658Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3655.552 kb on + strandat 3655.577 kb on - strandat 3655.616 kb on + strandat 3655.616 kb on + strandat 3655.616 kb on + strandat 3655.618 kb on + strandat 3655.618 kb on + strandat 3655.619 kb on - strandat 3655.628 kb on + strandat 3655.628 kb on + strandat 3655.693 kb on + strand, within CA264_15640at 3655.694 kb on - strand, within CA264_15640at 3655.699 kb on + strand, within CA264_15640at 3655.700 kb on - strand, within CA264_15640at 3655.713 kb on + strand, within CA264_15640at 3655.723 kb on + strand, within CA264_15640at 3655.723 kb on + strand, within CA264_15640at 3655.724 kb on - strand, within CA264_15640at 3655.752 kb on + strand, within CA264_15640at 3655.760 kb on + strand, within CA264_15640at 3655.805 kb on + strand, within CA264_15640at 3655.821 kb on + strand, within CA264_15640at 3655.821 kb on + strand, within CA264_15640at 3655.821 kb on + strand, within CA264_15640at 3655.821 kb on + strand, within CA264_15640at 3655.821 kb on + strand, within CA264_15640at 3655.823 kb on + strand, within CA264_15640at 3655.824 kb on - strand, within CA264_15640at 3655.874 kb on + strand, within CA264_15640at 3655.938 kb on + strand, within CA264_15640at 3655.939 kb on - strand, within CA264_15640at 3655.940 kb on + strand, within CA264_15640at 3655.940 kb on + strand, within CA264_15640at 3655.940 kb on + strand, within CA264_15640at 3655.940 kb on + strand, within CA264_15640at 3655.940 kb on + strand, within CA264_15640at 3655.940 kb on + strand, within CA264_15640at 3655.940 kb on + strand, within CA264_15640at 3655.940 kb on + strand, within CA264_15640at 3655.941 kb on - strand, within CA264_15640at 3655.941 kb on - strand, within CA264_15640at 3655.953 kb on + strand, within CA264_15640at 3656.027 kb on + strand, within CA264_15640at 3656.027 kb on + strand, within CA264_15640at 3656.028 kb on - strand, within CA264_15640at 3656.058 kb on + strand, within CA264_15640at 3656.066 kb on + strand, within CA264_15640at 3656.067 kb on - strand, within CA264_15640at 3656.094 kb on - strand, within CA264_15640at 3656.154 kb on - strand, within CA264_15640at 3656.203 kb on + strand, within CA264_15640at 3656.204 kb on - strand, within CA264_15640at 3656.204 kb on - strand, within CA264_15640at 3656.204 kb on - strand, within CA264_15640at 3656.242 kb on + strandat 3656.291 kb on - strandat 3656.382 kb on + strandat 3656.453 kb on - strandat 3656.471 kb on - strandat 3656.495 kb on + strandat 3656.501 kb on + strandat 3656.502 kb on - strandat 3656.526 kb on + strandat 3656.526 kb on + strandat 3656.531 kb on + strandat 3656.541 kb on + strandat 3656.541 kb on + strandat 3656.885 kb on + strand, within CA264_15645at 3656.922 kb on - strand, within CA264_15645at 3656.984 kb on + strand, within CA264_15645at 3656.984 kb on + strand, within CA264_15645at 3656.984 kb on + strand, within CA264_15645at 3656.985 kb on - strand, within CA264_15645at 3656.985 kb on - strand, within CA264_15645at 3656.988 kb on + strand, within CA264_15645at 3656.988 kb on + strand, within CA264_15645at 3656.988 kb on + strand, within CA264_15645at 3656.989 kb on - strand, within CA264_15645at 3656.989 kb on - strand, within CA264_15645at 3656.989 kb on - strand, within CA264_15645at 3656.989 kb on - strand, within CA264_15645at 3656.989 kb on - strand, within CA264_15645at 3657.000 kb on + strand, within CA264_15645at 3657.010 kb on + strand, within CA264_15645at 3657.010 kb on + strand, within CA264_15645at 3657.011 kb on - strand, within CA264_15645at 3657.013 kb on + strand, within CA264_15645at 3657.227 kb on - strand, within CA264_15645at 3657.240 kb on - strand, within CA264_15645at 3657.241 kb on + strand, within CA264_15645at 3657.251 kb on + strand, within CA264_15645at 3657.251 kb on + strand, within CA264_15645at 3657.251 kb on + strand, within CA264_15645at 3657.253 kb on + strand, within CA264_15645at 3657.253 kb on + strand, within CA264_15645at 3657.254 kb on - strand, within CA264_15645at 3657.326 kb on + strand, within CA264_15645at 3657.342 kb on + strand, within CA264_15645at 3657.343 kb on - strand, within CA264_15645at 3657.437 kb on + strand, within CA264_15645at 3657.438 kb on - strand, within CA264_15645at 3657.463 kb on + strand, within CA264_15645at 3657.475 kb on + strand, within CA264_15645at 3657.475 kb on + strand, within CA264_15645at 3657.617 kb on - strand, within CA264_15645at 3657.619 kb on + strand, within CA264_15645at 3657.633 kb on + strand, within CA264_15645at 3657.688 kb on + strandat 3657.689 kb on - strandat 3657.693 kb on - strandat 3657.740 kb on + strandat 3657.741 kb on - strandat 3657.752 kb on + strandat 3657.758 kb on + strandat 3657.802 kb on + strandat 3657.847 kb on + strandat 3657.848 kb on - strandat 3657.852 kb on - strandat 3657.852 kb on - strandat 3657.938 kb on - strand, within CA264_15650at 3657.938 kb on - strand, within CA264_15650at 3657.946 kb on + strand, within CA264_15650at 3657.946 kb on + strand, within CA264_15650at 3657.947 kb on - strand, within CA264_15650at 3657.994 kb on + strand, within CA264_15650at 3657.995 kb on - strand, within CA264_15650at 3657.996 kb on + strand, within CA264_15650at 3658.167 kb on - strandat 3658.173 kb on - strandat 3658.177 kb on + strandat 3658.178 kb on - strandat 3658.188 kb on - strandat 3658.231 kb on + strandat 3658.231 kb on + strandat 3658.232 kb on - strandat 3658.238 kb on + strandat 3658.238 kb on + strandat 3658.257 kb on + strandat 3658.258 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. benzoic 0.4 mg/ml
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3,655,552 + -0.3
3,655,577 - -0.9
3,655,616 + -0.3
3,655,616 + +0.2
3,655,616 + +0.2
3,655,618 + -0.2
3,655,618 + -1.0
3,655,619 - -0.0
3,655,628 + +0.3
3,655,628 + -0.9
3,655,693 + CA264_15640 0.16 -0.1
3,655,694 - CA264_15640 0.16 -0.8
3,655,699 + CA264_15640 0.17 -0.5
3,655,700 - CA264_15640 0.17 +1.7
3,655,713 + CA264_15640 0.19 +0.4
3,655,723 + CA264_15640 0.20 +0.5
3,655,723 + CA264_15640 0.20 -1.4
3,655,724 - CA264_15640 0.20 -0.1
3,655,752 + CA264_15640 0.24 -0.1
3,655,760 + CA264_15640 0.25 +0.0
3,655,805 + CA264_15640 0.32 +0.4
3,655,821 + CA264_15640 0.34 +0.2
3,655,821 + CA264_15640 0.34 -0.4
3,655,821 + CA264_15640 0.34 -2.1
3,655,821 + CA264_15640 0.34 -0.2
3,655,821 + CA264_15640 0.34 -1.0
3,655,823 + CA264_15640 0.34 +0.7
3,655,824 - CA264_15640 0.34 +0.2
3,655,874 + CA264_15640 0.42 -0.8
3,655,938 + CA264_15640 0.51 +2.1
3,655,939 - CA264_15640 0.51 +0.2
3,655,940 + CA264_15640 0.51 +0.2
3,655,940 + CA264_15640 0.51 +0.4
3,655,940 + CA264_15640 0.51 +1.1
3,655,940 + CA264_15640 0.51 -0.1
3,655,940 + CA264_15640 0.51 -0.1
3,655,940 + CA264_15640 0.51 -0.2
3,655,940 + CA264_15640 0.51 -0.2
3,655,940 + CA264_15640 0.51 -0.0
3,655,941 - CA264_15640 0.51 -0.6
3,655,941 - CA264_15640 0.51 -0.9
3,655,953 + CA264_15640 0.53 +0.5
3,656,027 + CA264_15640 0.63 +0.4
3,656,027 + CA264_15640 0.63 -0.4
3,656,028 - CA264_15640 0.64 +0.4
3,656,058 + CA264_15640 0.68 +0.1
3,656,066 + CA264_15640 0.69 +0.2
3,656,067 - CA264_15640 0.69 -1.2
3,656,094 - CA264_15640 0.73 -0.2
3,656,154 - CA264_15640 0.81 -0.6
3,656,203 + CA264_15640 0.88 -0.4
3,656,204 - CA264_15640 0.89 +1.2
3,656,204 - CA264_15640 0.89 -0.4
3,656,204 - CA264_15640 0.89 -0.4
3,656,242 + +0.2
3,656,291 - +0.2
3,656,382 + +1.2
3,656,453 - -2.0
3,656,471 - -0.7
3,656,495 + -0.2
3,656,501 + -0.4
3,656,502 - -0.6
3,656,526 + +0.1
3,656,526 + +0.9
3,656,531 + -0.7
3,656,541 + -0.7
3,656,541 + +0.6
3,656,885 + CA264_15645 0.30 +0.8
3,656,922 - CA264_15645 0.33 -1.5
3,656,984 + CA264_15645 0.38 +0.1
3,656,984 + CA264_15645 0.38 +3.2
3,656,984 + CA264_15645 0.38 -0.3
3,656,985 - CA264_15645 0.38 -1.3
3,656,985 - CA264_15645 0.38 -0.4
3,656,988 + CA264_15645 0.38 -0.9
3,656,988 + CA264_15645 0.38 +0.1
3,656,988 + CA264_15645 0.38 +1.6
3,656,989 - CA264_15645 0.38 -0.4
3,656,989 - CA264_15645 0.38 -0.7
3,656,989 - CA264_15645 0.38 +0.5
3,656,989 - CA264_15645 0.38 -0.3
3,656,989 - CA264_15645 0.38 -0.2
3,657,000 + CA264_15645 0.39 -0.0
3,657,010 + CA264_15645 0.40 +0.3
3,657,010 + CA264_15645 0.40 -1.1
3,657,011 - CA264_15645 0.40 +0.1
3,657,013 + CA264_15645 0.40 -1.0
3,657,227 - CA264_15645 0.57 -1.1
3,657,240 - CA264_15645 0.58 -1.4
3,657,241 + CA264_15645 0.58 -1.1
3,657,251 + CA264_15645 0.59 -0.6
3,657,251 + CA264_15645 0.59 +0.8
3,657,251 + CA264_15645 0.59 -1.6
3,657,253 + CA264_15645 0.59 -0.4
3,657,253 + CA264_15645 0.59 -0.1
3,657,254 - CA264_15645 0.59 +0.8
3,657,326 + CA264_15645 0.65 +0.0
3,657,342 + CA264_15645 0.66 -0.1
3,657,343 - CA264_15645 0.67 +0.1
3,657,437 + CA264_15645 0.74 -0.4
3,657,438 - CA264_15645 0.74 -0.8
3,657,463 + CA264_15645 0.76 -0.9
3,657,475 + CA264_15645 0.77 -1.0
3,657,475 + CA264_15645 0.77 -0.2
3,657,617 - CA264_15645 0.89 -0.0
3,657,619 + CA264_15645 0.89 -0.7
3,657,633 + CA264_15645 0.90 +0.4
3,657,688 + +0.1
3,657,689 - -0.7
3,657,693 - -0.1
3,657,740 + -0.7
3,657,741 - -0.3
3,657,752 + -0.5
3,657,758 + -1.1
3,657,802 + -0.1
3,657,847 + -0.6
3,657,848 - -2.0
3,657,852 - +0.8
3,657,852 - -1.1
3,657,938 - CA264_15650 0.18 -0.8
3,657,938 - CA264_15650 0.18 -1.4
3,657,946 + CA264_15650 0.21 +0.2
3,657,946 + CA264_15650 0.21 +0.8
3,657,947 - CA264_15650 0.21 -2.0
3,657,994 + CA264_15650 0.37 +0.2
3,657,995 - CA264_15650 0.37 -0.8
3,657,996 + CA264_15650 0.37 +0.2
3,658,167 - -0.4
3,658,173 - -1.1
3,658,177 + +0.5
3,658,178 - +0.5
3,658,188 - -0.4
3,658,231 + +0.3
3,658,231 + -1.4
3,658,232 - +0.0
3,658,238 + -0.6
3,658,238 + +0.9
3,658,257 + -0.0
3,658,258 - -1.5

Or see this region's nucleotide sequence