Experiment: m.b. benzoic 0.4 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_13640 and CA264_13645 are separated by 46 nucleotides CA264_13645 and CA264_13650 are separated by 260 nucleotides CA264_13650 and CA264_13655 are separated by 247 nucleotides
CA264_13640: CA264_13640 - hypothetical protein, at 3,188,839 to 3,190,818
_13640
CA264_13645: CA264_13645 - hypothetical protein, at 3,190,865 to 3,191,122
_13645
CA264_13650: CA264_13650 - hypothetical protein, at 3,191,383 to 3,191,694
_13650
CA264_13655: CA264_13655 - DNA metabolism protein, at 3,191,942 to 3,192,718
_13655
Position (kb)
3190
3191
3192 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3189.929 kb on + strand, within CA264_13640 at 3189.929 kb on + strand, within CA264_13640 at 3189.945 kb on + strand, within CA264_13640 at 3189.945 kb on + strand, within CA264_13640 at 3189.988 kb on + strand, within CA264_13640 at 3190.060 kb on + strand, within CA264_13640 at 3190.066 kb on - strand, within CA264_13640 at 3190.089 kb on + strand, within CA264_13640 at 3190.094 kb on + strand, within CA264_13640 at 3190.094 kb on + strand, within CA264_13640 at 3190.095 kb on - strand, within CA264_13640 at 3190.095 kb on - strand, within CA264_13640 at 3190.095 kb on - strand, within CA264_13640 at 3190.135 kb on + strand, within CA264_13640 at 3190.135 kb on + strand, within CA264_13640 at 3190.136 kb on - strand, within CA264_13640 at 3190.136 kb on - strand, within CA264_13640 at 3190.139 kb on + strand, within CA264_13640 at 3190.139 kb on + strand, within CA264_13640 at 3190.139 kb on + strand, within CA264_13640 at 3190.139 kb on + strand, within CA264_13640 at 3190.139 kb on + strand, within CA264_13640 at 3190.140 kb on - strand, within CA264_13640 at 3190.140 kb on - strand, within CA264_13640 at 3190.140 kb on - strand, within CA264_13640 at 3190.155 kb on + strand, within CA264_13640 at 3190.205 kb on + strand, within CA264_13640 at 3190.205 kb on + strand, within CA264_13640 at 3190.205 kb on + strand, within CA264_13640 at 3190.205 kb on + strand, within CA264_13640 at 3190.206 kb on - strand, within CA264_13640 at 3190.206 kb on - strand, within CA264_13640 at 3190.217 kb on + strand, within CA264_13640 at 3190.239 kb on - strand, within CA264_13640 at 3190.247 kb on + strand, within CA264_13640 at 3190.322 kb on + strand, within CA264_13640 at 3190.338 kb on + strand, within CA264_13640 at 3190.346 kb on + strand, within CA264_13640 at 3190.346 kb on + strand, within CA264_13640 at 3190.488 kb on + strand, within CA264_13640 at 3190.489 kb on - strand, within CA264_13640 at 3190.507 kb on + strand, within CA264_13640 at 3190.538 kb on + strand, within CA264_13640 at 3190.538 kb on + strand, within CA264_13640 at 3190.543 kb on + strand, within CA264_13640 at 3190.544 kb on - strand, within CA264_13640 at 3190.546 kb on + strand, within CA264_13640 at 3190.632 kb on - strand at 3190.694 kb on + strand at 3190.695 kb on - strand at 3190.707 kb on + strand at 3190.707 kb on + strand at 3190.828 kb on + strand at 3190.828 kb on + strand at 3190.829 kb on - strand at 3190.832 kb on + strand at 3190.833 kb on - strand at 3190.837 kb on - strand at 3190.837 kb on - strand at 3190.839 kb on + strand at 3190.839 kb on + strand at 3190.839 kb on + strand at 3190.839 kb on + strand at 3190.840 kb on - strand at 3190.840 kb on - strand at 3190.840 kb on - strand at 3190.844 kb on - strand at 3190.844 kb on - strand at 3190.844 kb on - strand at 3190.907 kb on - strand, within CA264_13645 at 3190.913 kb on - strand, within CA264_13645 at 3190.936 kb on + strand, within CA264_13645 at 3190.937 kb on - strand, within CA264_13645 at 3190.959 kb on - strand, within CA264_13645 at 3191.032 kb on + strand, within CA264_13645 at 3191.033 kb on - strand, within CA264_13645 at 3191.105 kb on + strand at 3191.133 kb on - strand at 3191.137 kb on + strand at 3191.157 kb on + strand at 3191.217 kb on + strand at 3191.217 kb on + strand at 3191.217 kb on + strand at 3191.218 kb on - strand at 3191.221 kb on - strand at 3191.222 kb on + strand at 3191.223 kb on - strand at 3191.223 kb on - strand at 3191.226 kb on + strand at 3191.261 kb on + strand at 3191.323 kb on + strand at 3191.324 kb on - strand at 3191.362 kb on - strand at 3191.377 kb on - strand at 3191.390 kb on + strand at 3191.391 kb on - strand at 3191.520 kb on + strand, within CA264_13650 at 3191.564 kb on - strand, within CA264_13650 at 3191.585 kb on + strand, within CA264_13650 at 3191.585 kb on + strand, within CA264_13650 at 3191.717 kb on - strand at 3191.825 kb on - strand at 3191.839 kb on - strand at 3191.840 kb on + strand at 3191.840 kb on + strand at 3191.841 kb on - strand at 3191.841 kb on - strand at 3191.841 kb on - strand at 3191.843 kb on - strand at 3191.844 kb on + strand at 3191.844 kb on + strand at 3191.845 kb on - strand at 3191.845 kb on - strand at 3191.848 kb on + strand at 3191.848 kb on + strand at 3191.848 kb on + strand at 3191.856 kb on + strand at 3191.856 kb on + strand at 3191.858 kb on + strand at 3191.944 kb on - strand at 3191.944 kb on - strand at 3191.976 kb on + strand at 3192.037 kb on + strand, within CA264_13655 at 3192.038 kb on - strand, within CA264_13655 at 3192.080 kb on - strand, within CA264_13655
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. benzoic 0.4 mg/ml remove 3,189,929 + CA264_13640 0.55 -0.4 3,189,929 + CA264_13640 0.55 -1.3 3,189,945 + CA264_13640 0.56 -1.3 3,189,945 + CA264_13640 0.56 -0.5 3,189,988 + CA264_13640 0.58 +0.0 3,190,060 + CA264_13640 0.62 -0.3 3,190,066 - CA264_13640 0.62 -0.3 3,190,089 + CA264_13640 0.63 +0.9 3,190,094 + CA264_13640 0.63 +1.0 3,190,094 + CA264_13640 0.63 -0.2 3,190,095 - CA264_13640 0.63 +0.0 3,190,095 - CA264_13640 0.63 +0.2 3,190,095 - CA264_13640 0.63 +0.2 3,190,135 + CA264_13640 0.65 +0.6 3,190,135 + CA264_13640 0.65 +1.3 3,190,136 - CA264_13640 0.66 +0.0 3,190,136 - CA264_13640 0.66 -0.1 3,190,139 + CA264_13640 0.66 -0.5 3,190,139 + CA264_13640 0.66 +1.5 3,190,139 + CA264_13640 0.66 -0.3 3,190,139 + CA264_13640 0.66 -1.0 3,190,139 + CA264_13640 0.66 -0.4 3,190,140 - CA264_13640 0.66 +1.0 3,190,140 - CA264_13640 0.66 -0.1 3,190,140 - CA264_13640 0.66 +1.6 3,190,155 + CA264_13640 0.66 -0.0 3,190,205 + CA264_13640 0.69 -1.0 3,190,205 + CA264_13640 0.69 -0.2 3,190,205 + CA264_13640 0.69 +0.6 3,190,205 + CA264_13640 0.69 +0.1 3,190,206 - CA264_13640 0.69 +0.0 3,190,206 - CA264_13640 0.69 -0.7 3,190,217 + CA264_13640 0.70 +0.6 3,190,239 - CA264_13640 0.71 -0.3 3,190,247 + CA264_13640 0.71 -0.1 3,190,322 + CA264_13640 0.75 -0.2 3,190,338 + CA264_13640 0.76 -0.3 3,190,346 + CA264_13640 0.76 -0.7 3,190,346 + CA264_13640 0.76 -0.3 3,190,488 + CA264_13640 0.83 -1.3 3,190,489 - CA264_13640 0.83 +0.3 3,190,507 + CA264_13640 0.84 -1.3 3,190,538 + CA264_13640 0.86 +0.3 3,190,538 + CA264_13640 0.86 -0.1 3,190,543 + CA264_13640 0.86 -0.5 3,190,544 - CA264_13640 0.86 -0.1 3,190,546 + CA264_13640 0.86 +1.7 3,190,632 - -0.5 3,190,694 + -0.3 3,190,695 - -0.4 3,190,707 + -0.8 3,190,707 + +0.8 3,190,828 + -1.5 3,190,828 + +1.0 3,190,829 - +0.4 3,190,832 + +2.0 3,190,833 - -0.3 3,190,837 - +0.1 3,190,837 - -0.5 3,190,839 + +0.2 3,190,839 + +0.8 3,190,839 + +1.6 3,190,839 + -0.3 3,190,840 - -0.2 3,190,840 - -0.1 3,190,840 - -0.6 3,190,844 - -0.8 3,190,844 - -1.5 3,190,844 - -0.0 3,190,907 - CA264_13645 0.16 -0.3 3,190,913 - CA264_13645 0.19 -0.5 3,190,936 + CA264_13645 0.28 -1.0 3,190,937 - CA264_13645 0.28 -0.4 3,190,959 - CA264_13645 0.36 -1.0 3,191,032 + CA264_13645 0.65 +0.4 3,191,033 - CA264_13645 0.65 +0.4 3,191,105 + -0.4 3,191,133 - -0.4 3,191,137 + -1.0 3,191,157 + +0.6 3,191,217 + -0.5 3,191,217 + +1.3 3,191,217 + -0.9 3,191,218 - +0.5 3,191,221 - -0.3 3,191,222 + +0.3 3,191,223 - +0.5 3,191,223 - -0.8 3,191,226 + +0.0 3,191,261 + -0.5 3,191,323 + -0.2 3,191,324 - +0.9 3,191,362 - +0.0 3,191,377 - -2.0 3,191,390 + +0.0 3,191,391 - -2.0 3,191,520 + CA264_13650 0.44 +0.5 3,191,564 - CA264_13650 0.58 -0.0 3,191,585 + CA264_13650 0.65 -0.5 3,191,585 + CA264_13650 0.65 +0.7 3,191,717 - +0.7 3,191,825 - +1.0 3,191,839 - -0.3 3,191,840 + +0.5 3,191,840 + +0.4 3,191,841 - -1.0 3,191,841 - -0.1 3,191,841 - +1.5 3,191,843 - +1.4 3,191,844 + -0.1 3,191,844 + +0.1 3,191,845 - +0.1 3,191,845 - -0.1 3,191,848 + +0.2 3,191,848 + -0.8 3,191,848 + +0.9 3,191,856 + +0.1 3,191,856 + +0.3 3,191,858 + +0.5 3,191,944 - -1.0 3,191,944 - +1.4 3,191,976 + +1.8 3,192,037 + CA264_13655 0.12 +0.0 3,192,038 - CA264_13655 0.12 -0.5 3,192,080 - CA264_13655 0.18 -1.1
Or see this region's nucleotide sequence