Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_10560

Experiment: m.b. benzoic 0.4 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_10555 and CA264_10560 are separated by 225 nucleotidesCA264_10560 and CA264_10565 are separated by 123 nucleotides CA264_10555: CA264_10555 - AraC family transcriptional regulator, at 2,446,470 to 2,447,375 _10555 CA264_10560: CA264_10560 - MBL fold metallo-hydrolase, at 2,447,601 to 2,448,413 _10560 CA264_10565: CA264_10565 - cation transporter, at 2,448,537 to 2,449,445 _10565 Position (kb) 2447 2448 2449Strain fitness (log2 ratio) -2 -1 0 1 2at 2446.611 kb on + strand, within CA264_10555at 2446.614 kb on + strand, within CA264_10555at 2446.615 kb on - strand, within CA264_10555at 2446.633 kb on + strand, within CA264_10555at 2446.818 kb on + strand, within CA264_10555at 2446.819 kb on - strand, within CA264_10555at 2446.835 kb on + strand, within CA264_10555at 2446.835 kb on + strand, within CA264_10555at 2446.836 kb on - strand, within CA264_10555at 2446.836 kb on - strand, within CA264_10555at 2446.836 kb on - strand, within CA264_10555at 2446.836 kb on - strand, within CA264_10555at 2446.987 kb on - strand, within CA264_10555at 2447.040 kb on + strand, within CA264_10555at 2447.082 kb on + strand, within CA264_10555at 2447.082 kb on + strand, within CA264_10555at 2447.082 kb on + strand, within CA264_10555at 2447.082 kb on + strand, within CA264_10555at 2447.082 kb on + strand, within CA264_10555at 2447.083 kb on - strand, within CA264_10555at 2447.083 kb on - strand, within CA264_10555at 2447.083 kb on - strand, within CA264_10555at 2447.106 kb on + strand, within CA264_10555at 2447.106 kb on + strand, within CA264_10555at 2447.107 kb on - strand, within CA264_10555at 2447.107 kb on - strand, within CA264_10555at 2447.109 kb on + strand, within CA264_10555at 2447.109 kb on + strand, within CA264_10555at 2447.110 kb on - strand, within CA264_10555at 2447.163 kb on + strand, within CA264_10555at 2447.164 kb on - strand, within CA264_10555at 2447.164 kb on - strand, within CA264_10555at 2447.248 kb on + strand, within CA264_10555at 2447.248 kb on + strand, within CA264_10555at 2447.289 kb on + strandat 2447.307 kb on - strandat 2447.374 kb on - strandat 2447.449 kb on + strandat 2447.450 kb on - strandat 2447.480 kb on - strandat 2447.530 kb on + strandat 2447.530 kb on + strandat 2447.531 kb on - strandat 2447.576 kb on + strandat 2447.870 kb on - strand, within CA264_10560at 2447.913 kb on + strand, within CA264_10560at 2447.949 kb on - strand, within CA264_10560at 2447.949 kb on - strand, within CA264_10560at 2447.964 kb on + strand, within CA264_10560at 2447.967 kb on + strand, within CA264_10560at 2447.968 kb on - strand, within CA264_10560at 2448.040 kb on + strand, within CA264_10560at 2448.041 kb on - strand, within CA264_10560at 2448.198 kb on + strand, within CA264_10560at 2448.199 kb on - strand, within CA264_10560at 2448.230 kb on + strand, within CA264_10560at 2448.230 kb on + strand, within CA264_10560at 2448.230 kb on + strand, within CA264_10560at 2448.231 kb on - strand, within CA264_10560at 2448.231 kb on - strand, within CA264_10560at 2448.231 kb on - strand, within CA264_10560at 2448.231 kb on - strand, within CA264_10560at 2448.234 kb on + strand, within CA264_10560at 2448.234 kb on + strand, within CA264_10560at 2448.234 kb on + strand, within CA264_10560at 2448.234 kb on + strand, within CA264_10560at 2448.234 kb on + strand, within CA264_10560at 2448.234 kb on + strand, within CA264_10560at 2448.235 kb on - strand, within CA264_10560at 2448.235 kb on - strand, within CA264_10560at 2448.235 kb on - strand, within CA264_10560at 2448.240 kb on + strand, within CA264_10560at 2448.282 kb on - strand, within CA264_10560at 2448.282 kb on - strand, within CA264_10560at 2448.283 kb on + strand, within CA264_10560at 2448.283 kb on + strand, within CA264_10560at 2448.403 kb on - strandat 2448.433 kb on + strandat 2448.440 kb on - strandat 2448.470 kb on + strandat 2448.471 kb on - strandat 2448.505 kb on - strandat 2448.505 kb on - strandat 2448.540 kb on + strandat 2448.544 kb on + strandat 2448.546 kb on + strandat 2448.546 kb on + strandat 2448.546 kb on + strandat 2448.552 kb on + strandat 2448.597 kb on + strandat 2448.650 kb on + strand, within CA264_10565at 2448.783 kb on + strand, within CA264_10565at 2448.784 kb on - strand, within CA264_10565at 2448.784 kb on - strand, within CA264_10565at 2448.885 kb on + strand, within CA264_10565at 2449.029 kb on - strand, within CA264_10565at 2449.108 kb on - strand, within CA264_10565at 2449.108 kb on - strand, within CA264_10565at 2449.160 kb on + strand, within CA264_10565at 2449.160 kb on + strand, within CA264_10565at 2449.161 kb on - strand, within CA264_10565at 2449.161 kb on - strand, within CA264_10565at 2449.170 kb on - strand, within CA264_10565at 2449.201 kb on + strand, within CA264_10565at 2449.202 kb on - strand, within CA264_10565at 2449.207 kb on + strand, within CA264_10565at 2449.207 kb on + strand, within CA264_10565at 2449.208 kb on - strand, within CA264_10565at 2449.208 kb on - strand, within CA264_10565at 2449.208 kb on - strand, within CA264_10565at 2449.208 kb on - strand, within CA264_10565

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. benzoic 0.4 mg/ml
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2,446,611 + CA264_10555 0.16 +0.1
2,446,614 + CA264_10555 0.16 +0.2
2,446,615 - CA264_10555 0.16 -0.7
2,446,633 + CA264_10555 0.18 -0.1
2,446,818 + CA264_10555 0.38 +0.8
2,446,819 - CA264_10555 0.39 +0.1
2,446,835 + CA264_10555 0.40 +0.4
2,446,835 + CA264_10555 0.40 -0.2
2,446,836 - CA264_10555 0.40 +0.1
2,446,836 - CA264_10555 0.40 -0.8
2,446,836 - CA264_10555 0.40 +0.0
2,446,836 - CA264_10555 0.40 -0.6
2,446,987 - CA264_10555 0.57 -0.6
2,447,040 + CA264_10555 0.63 +0.3
2,447,082 + CA264_10555 0.68 -0.2
2,447,082 + CA264_10555 0.68 -0.2
2,447,082 + CA264_10555 0.68 +0.0
2,447,082 + CA264_10555 0.68 +0.2
2,447,082 + CA264_10555 0.68 +1.6
2,447,083 - CA264_10555 0.68 -1.0
2,447,083 - CA264_10555 0.68 -0.3
2,447,083 - CA264_10555 0.68 +1.4
2,447,106 + CA264_10555 0.70 +0.2
2,447,106 + CA264_10555 0.70 -0.2
2,447,107 - CA264_10555 0.70 -0.4
2,447,107 - CA264_10555 0.70 -1.0
2,447,109 + CA264_10555 0.71 -0.0
2,447,109 + CA264_10555 0.71 +0.5
2,447,110 - CA264_10555 0.71 -0.1
2,447,163 + CA264_10555 0.76 +0.6
2,447,164 - CA264_10555 0.77 +1.8
2,447,164 - CA264_10555 0.77 -1.3
2,447,248 + CA264_10555 0.86 -2.2
2,447,248 + CA264_10555 0.86 +0.1
2,447,289 + -0.0
2,447,307 - +0.5
2,447,374 - +1.0
2,447,449 + -0.3
2,447,450 - -0.8
2,447,480 - +0.0
2,447,530 + +0.5
2,447,530 + +1.1
2,447,531 - +0.2
2,447,576 + +0.2
2,447,870 - CA264_10560 0.33 -0.5
2,447,913 + CA264_10560 0.38 +0.1
2,447,949 - CA264_10560 0.43 -0.5
2,447,949 - CA264_10560 0.43 -0.4
2,447,964 + CA264_10560 0.45 +0.2
2,447,967 + CA264_10560 0.45 +0.8
2,447,968 - CA264_10560 0.45 +0.8
2,448,040 + CA264_10560 0.54 +0.4
2,448,041 - CA264_10560 0.54 -0.0
2,448,198 + CA264_10560 0.73 -0.3
2,448,199 - CA264_10560 0.74 -1.2
2,448,230 + CA264_10560 0.77 +1.4
2,448,230 + CA264_10560 0.77 -0.8
2,448,230 + CA264_10560 0.77 -0.5
2,448,231 - CA264_10560 0.77 -0.7
2,448,231 - CA264_10560 0.77 -0.6
2,448,231 - CA264_10560 0.77 +0.3
2,448,231 - CA264_10560 0.77 +0.6
2,448,234 + CA264_10560 0.78 +1.4
2,448,234 + CA264_10560 0.78 -1.4
2,448,234 + CA264_10560 0.78 +0.4
2,448,234 + CA264_10560 0.78 +1.2
2,448,234 + CA264_10560 0.78 -0.4
2,448,234 + CA264_10560 0.78 +0.2
2,448,235 - CA264_10560 0.78 +0.2
2,448,235 - CA264_10560 0.78 -0.7
2,448,235 - CA264_10560 0.78 +1.8
2,448,240 + CA264_10560 0.79 -0.1
2,448,282 - CA264_10560 0.84 +1.3
2,448,282 - CA264_10560 0.84 -0.2
2,448,283 + CA264_10560 0.84 -0.1
2,448,283 + CA264_10560 0.84 -0.9
2,448,403 - +0.4
2,448,433 + -0.0
2,448,440 - -0.2
2,448,470 + -0.3
2,448,471 - +0.1
2,448,505 - -0.4
2,448,505 - -0.5
2,448,540 + -1.4
2,448,544 + -0.2
2,448,546 + -2.0
2,448,546 + -0.6
2,448,546 + -2.4
2,448,552 + +0.8
2,448,597 + -0.3
2,448,650 + CA264_10565 0.12 -0.9
2,448,783 + CA264_10565 0.27 +0.5
2,448,784 - CA264_10565 0.27 -1.5
2,448,784 - CA264_10565 0.27 -0.3
2,448,885 + CA264_10565 0.38 +0.8
2,449,029 - CA264_10565 0.54 +0.5
2,449,108 - CA264_10565 0.63 -0.4
2,449,108 - CA264_10565 0.63 +1.1
2,449,160 + CA264_10565 0.69 +0.1
2,449,160 + CA264_10565 0.69 -0.4
2,449,161 - CA264_10565 0.69 +1.8
2,449,161 - CA264_10565 0.69 -0.3
2,449,170 - CA264_10565 0.70 +0.1
2,449,201 + CA264_10565 0.73 +0.9
2,449,202 - CA264_10565 0.73 -0.5
2,449,207 + CA264_10565 0.74 -0.2
2,449,207 + CA264_10565 0.74 -2.3
2,449,208 - CA264_10565 0.74 -0.4
2,449,208 - CA264_10565 0.74 -1.4
2,449,208 - CA264_10565 0.74 +0.5
2,449,208 - CA264_10565 0.74 -0.3

Or see this region's nucleotide sequence