Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_09710

Experiment: m.b. benzoic 0.4 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_09705 and CA264_09710 are separated by 182 nucleotidesCA264_09710 and CA264_09715 are separated by 308 nucleotidesCA264_09715 and CA264_09720 are separated by 10 nucleotides CA264_09705: CA264_09705 - NAD-dependent dehydratase, at 2,254,769 to 2,255,836 _09705 CA264_09710: CA264_09710 - transcriptional regulator, at 2,256,019 to 2,256,132 _09710 CA264_09715: CA264_09715 - hypothetical protein, at 2,256,441 to 2,257,082 _09715 CA264_09720: CA264_09720 - alpha/beta hydrolase, at 2,257,093 to 2,257,893 _09720 Position (kb) 2256 2257Strain fitness (log2 ratio) -2 -1 0 1 2at 2255.098 kb on - strand, within CA264_09705at 2255.378 kb on + strand, within CA264_09705at 2255.379 kb on - strand, within CA264_09705at 2255.411 kb on + strand, within CA264_09705at 2255.493 kb on + strand, within CA264_09705at 2255.820 kb on - strandat 2255.830 kb on + strandat 2255.830 kb on + strandat 2255.830 kb on + strandat 2255.830 kb on + strandat 2255.830 kb on + strandat 2255.837 kb on - strandat 2255.839 kb on + strandat 2255.839 kb on + strandat 2255.840 kb on - strandat 2255.840 kb on - strandat 2255.851 kb on + strandat 2255.864 kb on - strandat 2255.872 kb on + strandat 2255.873 kb on - strandat 2255.885 kb on + strandat 2255.894 kb on + strandat 2255.920 kb on - strandat 2255.929 kb on + strandat 2255.930 kb on - strandat 2255.930 kb on - strandat 2255.932 kb on + strandat 2255.932 kb on + strandat 2255.941 kb on - strandat 2255.941 kb on - strandat 2255.941 kb on - strandat 2256.020 kb on + strandat 2256.021 kb on - strandat 2256.035 kb on + strand, within CA264_09710at 2256.061 kb on + strand, within CA264_09710at 2256.132 kb on + strandat 2256.132 kb on + strandat 2256.133 kb on - strandat 2256.133 kb on - strandat 2256.136 kb on + strandat 2256.136 kb on + strandat 2256.136 kb on + strandat 2256.136 kb on + strandat 2256.136 kb on + strandat 2256.136 kb on + strandat 2256.136 kb on + strandat 2256.137 kb on - strandat 2256.137 kb on - strandat 2256.138 kb on + strandat 2256.139 kb on - strandat 2256.145 kb on + strandat 2256.184 kb on - strandat 2256.184 kb on - strandat 2256.184 kb on - strandat 2256.184 kb on - strandat 2256.191 kb on - strandat 2256.191 kb on - strandat 2256.226 kb on + strandat 2256.230 kb on + strandat 2256.239 kb on - strandat 2256.269 kb on + strandat 2256.270 kb on - strandat 2256.282 kb on - strandat 2256.343 kb on + strandat 2256.343 kb on + strandat 2256.343 kb on + strandat 2256.344 kb on - strandat 2256.366 kb on - strandat 2256.391 kb on - strandat 2256.399 kb on - strandat 2256.545 kb on + strand, within CA264_09715at 2256.566 kb on + strand, within CA264_09715at 2256.567 kb on - strand, within CA264_09715at 2256.627 kb on + strand, within CA264_09715at 2256.628 kb on - strand, within CA264_09715at 2256.656 kb on + strand, within CA264_09715at 2256.656 kb on + strand, within CA264_09715at 2256.656 kb on + strand, within CA264_09715at 2256.687 kb on + strand, within CA264_09715at 2256.726 kb on - strand, within CA264_09715at 2256.840 kb on + strand, within CA264_09715at 2256.841 kb on - strand, within CA264_09715at 2256.883 kb on + strand, within CA264_09715at 2256.886 kb on + strand, within CA264_09715at 2256.887 kb on - strand, within CA264_09715at 2256.926 kb on + strand, within CA264_09715at 2256.963 kb on + strand, within CA264_09715at 2256.980 kb on + strand, within CA264_09715at 2256.980 kb on + strand, within CA264_09715at 2256.980 kb on + strand, within CA264_09715at 2257.031 kb on + strandat 2257.032 kb on - strandat 2257.032 kb on - strandat 2257.036 kb on + strandat 2257.037 kb on - strandat 2257.037 kb on - strandat 2257.037 kb on - strandat 2257.037 kb on - strandat 2257.038 kb on + strandat 2257.038 kb on + strandat 2257.039 kb on - strandat 2257.053 kb on + strandat 2257.108 kb on - strandat 2257.109 kb on + strandat 2257.119 kb on + strandat 2257.119 kb on + strandat 2257.119 kb on + strandat 2257.119 kb on + strandat 2257.120 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. benzoic 0.4 mg/ml
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2,255,098 - CA264_09705 0.31 -0.2
2,255,378 + CA264_09705 0.57 -0.1
2,255,379 - CA264_09705 0.57 +0.0
2,255,411 + CA264_09705 0.60 -0.6
2,255,493 + CA264_09705 0.68 -0.0
2,255,820 - -0.8
2,255,830 + +0.2
2,255,830 + +0.2
2,255,830 + +1.8
2,255,830 + +0.8
2,255,830 + +0.8
2,255,837 - +1.4
2,255,839 + +0.5
2,255,839 + +0.3
2,255,840 - -1.0
2,255,840 - -0.6
2,255,851 + +0.5
2,255,864 - -0.6
2,255,872 + -0.4
2,255,873 - -2.4
2,255,885 + -1.5
2,255,894 + +0.5
2,255,920 - -1.1
2,255,929 + -0.0
2,255,930 - -0.2
2,255,930 - -0.7
2,255,932 + -1.3
2,255,932 + +0.4
2,255,941 - +1.1
2,255,941 - -0.8
2,255,941 - +0.2
2,256,020 + +1.0
2,256,021 - -0.2
2,256,035 + CA264_09710 0.14 -0.8
2,256,061 + CA264_09710 0.37 -1.6
2,256,132 + -0.5
2,256,132 + +0.8
2,256,133 - -0.8
2,256,133 - -1.8
2,256,136 + -0.2
2,256,136 + -0.5
2,256,136 + -0.5
2,256,136 + +0.6
2,256,136 + +0.9
2,256,136 + -1.5
2,256,136 + -0.5
2,256,137 - +0.2
2,256,137 - -0.5
2,256,138 + -1.4
2,256,139 - -1.2
2,256,145 + +0.8
2,256,184 - -0.5
2,256,184 - -0.2
2,256,184 - +0.8
2,256,184 - -0.7
2,256,191 - +0.8
2,256,191 - +0.4
2,256,226 + +1.4
2,256,230 + +0.7
2,256,239 - -1.2
2,256,269 + +0.5
2,256,270 - +1.0
2,256,282 - -0.2
2,256,343 + -0.7
2,256,343 + -1.1
2,256,343 + +0.5
2,256,344 - +0.2
2,256,366 - -0.6
2,256,391 - -0.5
2,256,399 - -0.3
2,256,545 + CA264_09715 0.16 -0.4
2,256,566 + CA264_09715 0.19 +0.5
2,256,567 - CA264_09715 0.20 -0.3
2,256,627 + CA264_09715 0.29 +0.2
2,256,628 - CA264_09715 0.29 +0.2
2,256,656 + CA264_09715 0.33 +1.4
2,256,656 + CA264_09715 0.33 +0.5
2,256,656 + CA264_09715 0.33 -1.6
2,256,687 + CA264_09715 0.38 -0.7
2,256,726 - CA264_09715 0.44 -0.2
2,256,840 + CA264_09715 0.62 -0.0
2,256,841 - CA264_09715 0.62 +2.4
2,256,883 + CA264_09715 0.69 -0.2
2,256,886 + CA264_09715 0.69 -0.6
2,256,887 - CA264_09715 0.69 +1.8
2,256,926 + CA264_09715 0.76 -0.3
2,256,963 + CA264_09715 0.81 +0.8
2,256,980 + CA264_09715 0.84 +0.2
2,256,980 + CA264_09715 0.84 -1.4
2,256,980 + CA264_09715 0.84 -0.6
2,257,031 + +0.3
2,257,032 - -0.2
2,257,032 - +0.3
2,257,036 + +0.6
2,257,037 - +0.9
2,257,037 - +0.8
2,257,037 - -0.3
2,257,037 - +0.2
2,257,038 + +0.5
2,257,038 + +0.2
2,257,039 - -0.0
2,257,053 + +0.5
2,257,108 - -0.1
2,257,109 + -1.0
2,257,119 + +0.4
2,257,119 + +0.3
2,257,119 + -0.0
2,257,119 + -0.2
2,257,120 - +0.6

Or see this region's nucleotide sequence