Experiment: m.b. benzoic 0.4 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_08245 and CA264_08250 are separated by 264 nucleotides CA264_08250 and CA264_08255 are separated by 224 nucleotides
CA264_08245: CA264_08245 - deoxyribonuclease HsdR, at 1,905,360 to 1,906,865
_08245
CA264_08250: CA264_08250 - hypothetical protein, at 1,907,130 to 1,907,714
_08250
CA264_08255: CA264_08255 - hypothetical protein, at 1,907,939 to 1,909,021
_08255
Position (kb)
1907
1908 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1906.154 kb on + strand, within CA264_08245 at 1906.155 kb on - strand, within CA264_08245 at 1906.169 kb on + strand, within CA264_08245 at 1906.187 kb on + strand, within CA264_08245 at 1906.190 kb on + strand, within CA264_08245 at 1906.190 kb on + strand, within CA264_08245 at 1906.202 kb on + strand, within CA264_08245 at 1906.254 kb on - strand, within CA264_08245 at 1906.254 kb on - strand, within CA264_08245 at 1906.273 kb on - strand, within CA264_08245 at 1906.362 kb on + strand, within CA264_08245 at 1906.363 kb on - strand, within CA264_08245 at 1906.363 kb on - strand, within CA264_08245 at 1906.363 kb on - strand, within CA264_08245 at 1906.371 kb on - strand, within CA264_08245 at 1906.373 kb on + strand, within CA264_08245 at 1906.431 kb on + strand, within CA264_08245 at 1906.432 kb on - strand, within CA264_08245 at 1906.432 kb on - strand, within CA264_08245 at 1906.460 kb on + strand, within CA264_08245 at 1906.472 kb on + strand, within CA264_08245 at 1906.473 kb on - strand, within CA264_08245 at 1906.491 kb on - strand, within CA264_08245 at 1906.619 kb on + strand, within CA264_08245 at 1906.622 kb on - strand, within CA264_08245 at 1906.622 kb on - strand, within CA264_08245 at 1906.692 kb on + strand, within CA264_08245 at 1906.726 kb on + strand at 1906.726 kb on + strand at 1906.727 kb on - strand at 1906.767 kb on + strand at 1906.768 kb on - strand at 1906.768 kb on - strand at 1906.768 kb on - strand at 1906.768 kb on - strand at 1906.785 kb on + strand at 1906.806 kb on + strand at 1906.806 kb on + strand at 1906.807 kb on - strand at 1906.865 kb on + strand at 1906.866 kb on - strand at 1906.866 kb on - strand at 1906.866 kb on - strand at 1906.867 kb on + strand at 1906.873 kb on - strand at 1906.876 kb on - strand at 1906.898 kb on + strand at 1906.898 kb on + strand at 1906.911 kb on - strand at 1906.946 kb on + strand at 1906.997 kb on + strand at 1907.026 kb on + strand at 1907.116 kb on + strand at 1907.116 kb on + strand at 1907.116 kb on + strand at 1907.117 kb on - strand at 1907.126 kb on + strand at 1907.131 kb on + strand at 1907.131 kb on + strand at 1907.131 kb on + strand at 1907.131 kb on + strand at 1907.131 kb on + strand at 1907.140 kb on + strand at 1907.140 kb on + strand at 1907.140 kb on + strand at 1907.141 kb on - strand at 1907.143 kb on + strand at 1907.143 kb on + strand at 1907.143 kb on + strand at 1907.144 kb on - strand at 1907.225 kb on - strand, within CA264_08250 at 1907.247 kb on - strand, within CA264_08250 at 1907.247 kb on - strand, within CA264_08250 at 1907.503 kb on + strand, within CA264_08250 at 1907.506 kb on + strand, within CA264_08250 at 1907.506 kb on + strand, within CA264_08250 at 1907.513 kb on + strand, within CA264_08250 at 1907.660 kb on - strand at 1907.660 kb on - strand at 1907.660 kb on - strand at 1907.661 kb on + strand at 1907.661 kb on + strand at 1907.662 kb on - strand at 1907.662 kb on - strand at 1907.662 kb on - strand at 1907.662 kb on - strand at 1907.679 kb on + strand at 1907.737 kb on + strand at 1907.737 kb on + strand at 1907.737 kb on + strand at 1907.738 kb on - strand at 1907.738 kb on - strand at 1907.738 kb on - strand at 1907.754 kb on + strand at 1907.755 kb on - strand at 1907.811 kb on + strand at 1907.821 kb on + strand at 1907.875 kb on - strand at 1907.894 kb on - strand at 1907.896 kb on - strand at 1907.896 kb on - strand at 1907.896 kb on - strand at 1907.901 kb on + strand at 1907.901 kb on + strand at 1907.901 kb on + strand at 1907.901 kb on + strand at 1907.901 kb on + strand at 1907.901 kb on + strand at 1907.901 kb on + strand at 1907.901 kb on + strand at 1907.902 kb on - strand at 1907.902 kb on - strand at 1907.903 kb on + strand at 1907.994 kb on + strand at 1907.995 kb on - strand at 1907.995 kb on - strand at 1908.056 kb on + strand, within CA264_08255 at 1908.057 kb on - strand, within CA264_08255 at 1908.151 kb on + strand, within CA264_08255 at 1908.151 kb on + strand, within CA264_08255 at 1908.187 kb on + strand, within CA264_08255 at 1908.187 kb on + strand, within CA264_08255 at 1908.187 kb on + strand, within CA264_08255 at 1908.188 kb on - strand, within CA264_08255 at 1908.188 kb on - strand, within CA264_08255 at 1908.204 kb on - strand, within CA264_08255 at 1908.261 kb on + strand, within CA264_08255 at 1908.367 kb on + strand, within CA264_08255 at 1908.380 kb on + strand, within CA264_08255 at 1908.380 kb on + strand, within CA264_08255 at 1908.380 kb on + strand, within CA264_08255 at 1908.380 kb on + strand, within CA264_08255 at 1908.380 kb on + strand, within CA264_08255 at 1908.380 kb on + strand, within CA264_08255 at 1908.380 kb on + strand, within CA264_08255 at 1908.381 kb on - strand, within CA264_08255 at 1908.381 kb on - strand, within CA264_08255 at 1908.381 kb on - strand, within CA264_08255 at 1908.457 kb on + strand, within CA264_08255 at 1908.458 kb on - strand, within CA264_08255 at 1908.538 kb on + strand, within CA264_08255 at 1908.557 kb on + strand, within CA264_08255 at 1908.617 kb on + strand, within CA264_08255 at 1908.617 kb on + strand, within CA264_08255 at 1908.617 kb on + strand, within CA264_08255 at 1908.617 kb on + strand, within CA264_08255 at 1908.618 kb on - strand, within CA264_08255
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. benzoic 0.4 mg/ml remove 1,906,154 + CA264_08245 0.53 -0.3 1,906,155 - CA264_08245 0.53 -0.4 1,906,169 + CA264_08245 0.54 +0.0 1,906,187 + CA264_08245 0.55 +0.4 1,906,190 + CA264_08245 0.55 +0.1 1,906,190 + CA264_08245 0.55 -1.5 1,906,202 + CA264_08245 0.56 +0.3 1,906,254 - CA264_08245 0.59 -0.4 1,906,254 - CA264_08245 0.59 -0.2 1,906,273 - CA264_08245 0.61 -0.3 1,906,362 + CA264_08245 0.67 +0.0 1,906,363 - CA264_08245 0.67 +0.0 1,906,363 - CA264_08245 0.67 -0.6 1,906,363 - CA264_08245 0.67 -0.4 1,906,371 - CA264_08245 0.67 -0.8 1,906,373 + CA264_08245 0.67 -0.5 1,906,431 + CA264_08245 0.71 -0.0 1,906,432 - CA264_08245 0.71 -0.1 1,906,432 - CA264_08245 0.71 -0.3 1,906,460 + CA264_08245 0.73 -0.5 1,906,472 + CA264_08245 0.74 -0.5 1,906,473 - CA264_08245 0.74 +0.0 1,906,491 - CA264_08245 0.75 +0.7 1,906,619 + CA264_08245 0.84 -0.3 1,906,622 - CA264_08245 0.84 +0.2 1,906,622 - CA264_08245 0.84 +0.3 1,906,692 + CA264_08245 0.88 +0.9 1,906,726 + -0.5 1,906,726 + -0.8 1,906,727 - -0.2 1,906,767 + +1.8 1,906,768 - +0.2 1,906,768 - +0.6 1,906,768 - -1.1 1,906,768 - +0.4 1,906,785 + -0.3 1,906,806 + -0.8 1,906,806 + -0.9 1,906,807 - +0.5 1,906,865 + -0.4 1,906,866 - +0.6 1,906,866 - +0.1 1,906,866 - +0.7 1,906,867 + -0.3 1,906,873 - -0.5 1,906,876 - -1.1 1,906,898 + +0.0 1,906,898 + -1.5 1,906,911 - +0.7 1,906,946 + +0.3 1,906,997 + +0.1 1,907,026 + +1.2 1,907,116 + +1.5 1,907,116 + +0.4 1,907,116 + -1.5 1,907,117 - +0.8 1,907,126 + -0.8 1,907,131 + -0.3 1,907,131 + -0.3 1,907,131 + +0.2 1,907,131 + -0.3 1,907,131 + -0.2 1,907,140 + -0.3 1,907,140 + -0.6 1,907,140 + +0.6 1,907,141 - -0.8 1,907,143 + +0.1 1,907,143 + +0.4 1,907,143 + +0.4 1,907,144 - -1.2 1,907,225 - CA264_08250 0.16 +1.2 1,907,247 - CA264_08250 0.20 -0.5 1,907,247 - CA264_08250 0.20 -0.8 1,907,503 + CA264_08250 0.64 +0.0 1,907,506 + CA264_08250 0.64 -0.9 1,907,506 + CA264_08250 0.64 +0.5 1,907,513 + CA264_08250 0.65 -0.3 1,907,660 - -0.8 1,907,660 - -0.7 1,907,660 - -0.1 1,907,661 + -0.5 1,907,661 + -2.0 1,907,662 - +0.2 1,907,662 - -0.3 1,907,662 - -2.8 1,907,662 - -0.4 1,907,679 + +0.7 1,907,737 + -0.3 1,907,737 + +0.8 1,907,737 + +0.2 1,907,738 - +0.8 1,907,738 - -0.2 1,907,738 - -0.8 1,907,754 + -0.9 1,907,755 - +1.1 1,907,811 + -0.8 1,907,821 + -0.3 1,907,875 - -0.2 1,907,894 - -0.8 1,907,896 - +0.3 1,907,896 - +0.8 1,907,896 - -0.5 1,907,901 + +0.9 1,907,901 + -0.2 1,907,901 + +0.0 1,907,901 + -0.5 1,907,901 + -0.2 1,907,901 + +1.5 1,907,901 + +1.5 1,907,901 + +0.4 1,907,902 - -1.0 1,907,902 - +0.8 1,907,903 + -0.5 1,907,994 + -0.1 1,907,995 - -1.0 1,907,995 - +0.3 1,908,056 + CA264_08255 0.11 +1.0 1,908,057 - CA264_08255 0.11 +0.8 1,908,151 + CA264_08255 0.20 -0.1 1,908,151 + CA264_08255 0.20 +1.2 1,908,187 + CA264_08255 0.23 -0.2 1,908,187 + CA264_08255 0.23 -1.4 1,908,187 + CA264_08255 0.23 -0.8 1,908,188 - CA264_08255 0.23 -0.8 1,908,188 - CA264_08255 0.23 -0.5 1,908,204 - CA264_08255 0.24 +0.0 1,908,261 + CA264_08255 0.30 +0.7 1,908,367 + CA264_08255 0.40 +1.2 1,908,380 + CA264_08255 0.41 -1.4 1,908,380 + CA264_08255 0.41 +0.8 1,908,380 + CA264_08255 0.41 +1.5 1,908,380 + CA264_08255 0.41 +0.7 1,908,380 + CA264_08255 0.41 -0.8 1,908,380 + CA264_08255 0.41 -0.8 1,908,380 + CA264_08255 0.41 -1.2 1,908,381 - CA264_08255 0.41 -0.1 1,908,381 - CA264_08255 0.41 -0.1 1,908,381 - CA264_08255 0.41 +0.3 1,908,457 + CA264_08255 0.48 +0.5 1,908,458 - CA264_08255 0.48 +0.1 1,908,538 + CA264_08255 0.55 +0.2 1,908,557 + CA264_08255 0.57 +0.8 1,908,617 + CA264_08255 0.63 -0.3 1,908,617 + CA264_08255 0.63 +0.1 1,908,617 + CA264_08255 0.63 -0.4 1,908,617 + CA264_08255 0.63 -0.4 1,908,618 - CA264_08255 0.63 -0.4
Or see this region's nucleotide sequence