Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_07555

Experiment: m.b. benzoic 0.4 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_07550 and CA264_07555 are separated by 632 nucleotidesCA264_07555 and CA264_07560 are separated by 77 nucleotides CA264_07550: CA264_07550 - transcriptional regulator, at 1,750,011 to 1,750,787 _07550 CA264_07555: CA264_07555 - aqualysin 1, at 1,751,420 to 1,752,718 _07555 CA264_07560: CA264_07560 - DNA helicase RecQ, at 1,752,796 to 1,754,928 _07560 Position (kb) 1751 1752 1753Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1750.826 kb on - strandat 1750.828 kb on - strandat 1750.971 kb on + strandat 1751.023 kb on + strandat 1751.045 kb on + strandat 1751.045 kb on + strandat 1751.045 kb on + strandat 1751.045 kb on + strandat 1751.045 kb on + strandat 1751.046 kb on - strandat 1751.249 kb on + strandat 1751.291 kb on - strandat 1751.291 kb on - strandat 1751.319 kb on + strandat 1751.330 kb on - strandat 1751.351 kb on - strandat 1751.365 kb on + strandat 1751.365 kb on + strandat 1751.479 kb on - strandat 1751.479 kb on - strandat 1751.479 kb on - strandat 1751.504 kb on - strandat 1751.531 kb on - strandat 1751.650 kb on - strand, within CA264_07555at 1751.650 kb on - strand, within CA264_07555at 1751.717 kb on + strand, within CA264_07555at 1751.717 kb on + strand, within CA264_07555at 1751.758 kb on + strand, within CA264_07555at 1751.848 kb on + strand, within CA264_07555at 1751.848 kb on + strand, within CA264_07555at 1751.849 kb on - strand, within CA264_07555at 1751.854 kb on + strand, within CA264_07555at 1751.855 kb on - strand, within CA264_07555at 1751.933 kb on + strand, within CA264_07555at 1751.933 kb on + strand, within CA264_07555at 1751.934 kb on - strand, within CA264_07555at 1751.936 kb on - strand, within CA264_07555at 1751.936 kb on - strand, within CA264_07555at 1751.936 kb on - strand, within CA264_07555at 1751.936 kb on - strand, within CA264_07555at 1751.936 kb on - strand, within CA264_07555at 1752.073 kb on - strand, within CA264_07555at 1752.142 kb on - strand, within CA264_07555at 1752.152 kb on - strand, within CA264_07555at 1752.183 kb on + strand, within CA264_07555at 1752.184 kb on - strand, within CA264_07555at 1752.197 kb on - strand, within CA264_07555at 1752.223 kb on - strand, within CA264_07555at 1752.259 kb on + strand, within CA264_07555at 1752.359 kb on - strand, within CA264_07555at 1752.508 kb on + strand, within CA264_07555at 1752.520 kb on - strand, within CA264_07555at 1752.737 kb on - strandat 1752.780 kb on - strandat 1752.846 kb on - strandat 1752.848 kb on + strandat 1752.855 kb on - strandat 1752.855 kb on - strandat 1752.933 kb on + strandat 1752.933 kb on + strandat 1752.933 kb on + strandat 1752.933 kb on + strandat 1752.934 kb on - strandat 1752.934 kb on - strandat 1752.936 kb on - strandat 1752.953 kb on + strandat 1752.953 kb on + strandat 1752.954 kb on - strandat 1752.954 kb on - strandat 1752.986 kb on + strandat 1753.053 kb on + strand, within CA264_07560at 1753.053 kb on + strand, within CA264_07560at 1753.053 kb on + strand, within CA264_07560at 1753.054 kb on - strand, within CA264_07560at 1753.057 kb on + strand, within CA264_07560at 1753.058 kb on - strand, within CA264_07560at 1753.058 kb on - strand, within CA264_07560at 1753.111 kb on - strand, within CA264_07560at 1753.159 kb on - strand, within CA264_07560at 1753.231 kb on - strand, within CA264_07560at 1753.351 kb on + strand, within CA264_07560at 1753.453 kb on - strand, within CA264_07560at 1753.478 kb on + strand, within CA264_07560at 1753.491 kb on - strand, within CA264_07560at 1753.504 kb on - strand, within CA264_07560at 1753.517 kb on - strand, within CA264_07560at 1753.574 kb on + strand, within CA264_07560at 1753.679 kb on - strand, within CA264_07560

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. benzoic 0.4 mg/ml
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1,750,826 - -1.4
1,750,828 - +0.8
1,750,971 + +0.0
1,751,023 + -0.1
1,751,045 + +2.8
1,751,045 + -0.5
1,751,045 + -2.2
1,751,045 + -0.2
1,751,045 + -0.2
1,751,046 - -0.5
1,751,249 + -2.0
1,751,291 - +0.8
1,751,291 - -0.9
1,751,319 + -0.6
1,751,330 - +1.0
1,751,351 - -0.1
1,751,365 + +0.8
1,751,365 + -0.9
1,751,479 - +0.5
1,751,479 - -0.2
1,751,479 - +0.5
1,751,504 - -0.0
1,751,531 - +0.3
1,751,650 - CA264_07555 0.18 +0.7
1,751,650 - CA264_07555 0.18 -0.2
1,751,717 + CA264_07555 0.23 +0.2
1,751,717 + CA264_07555 0.23 +0.4
1,751,758 + CA264_07555 0.26 -0.1
1,751,848 + CA264_07555 0.33 -0.2
1,751,848 + CA264_07555 0.33 +0.6
1,751,849 - CA264_07555 0.33 +0.4
1,751,854 + CA264_07555 0.33 +0.5
1,751,855 - CA264_07555 0.33 -0.8
1,751,933 + CA264_07555 0.39 -2.1
1,751,933 + CA264_07555 0.39 +0.8
1,751,934 - CA264_07555 0.40 +0.9
1,751,936 - CA264_07555 0.40 +0.8
1,751,936 - CA264_07555 0.40 -0.8
1,751,936 - CA264_07555 0.40 -0.2
1,751,936 - CA264_07555 0.40 +0.8
1,751,936 - CA264_07555 0.40 -0.1
1,752,073 - CA264_07555 0.50 +1.2
1,752,142 - CA264_07555 0.56 -0.7
1,752,152 - CA264_07555 0.56 +0.5
1,752,183 + CA264_07555 0.59 +0.9
1,752,184 - CA264_07555 0.59 -0.3
1,752,197 - CA264_07555 0.60 +0.8
1,752,223 - CA264_07555 0.62 +1.0
1,752,259 + CA264_07555 0.65 -0.2
1,752,359 - CA264_07555 0.72 +0.3
1,752,508 + CA264_07555 0.84 -1.5
1,752,520 - CA264_07555 0.85 +0.8
1,752,737 - +0.2
1,752,780 - +0.4
1,752,846 - -0.2
1,752,848 + +1.1
1,752,855 - -1.2
1,752,855 - +0.3
1,752,933 + -1.3
1,752,933 + -1.2
1,752,933 + +0.2
1,752,933 + +0.5
1,752,934 - -0.2
1,752,934 - -0.2
1,752,936 - -0.1
1,752,953 + -0.5
1,752,953 + -0.5
1,752,954 - +1.3
1,752,954 - -0.0
1,752,986 + +0.1
1,753,053 + CA264_07560 0.12 -0.3
1,753,053 + CA264_07560 0.12 +0.6
1,753,053 + CA264_07560 0.12 +0.4
1,753,054 - CA264_07560 0.12 -0.4
1,753,057 + CA264_07560 0.12 +0.1
1,753,058 - CA264_07560 0.12 +0.8
1,753,058 - CA264_07560 0.12 -0.4
1,753,111 - CA264_07560 0.15 -0.1
1,753,159 - CA264_07560 0.17 -2.0
1,753,231 - CA264_07560 0.20 -0.5
1,753,351 + CA264_07560 0.26 +1.5
1,753,453 - CA264_07560 0.31 +0.0
1,753,478 + CA264_07560 0.32 +1.1
1,753,491 - CA264_07560 0.33 +0.0
1,753,504 - CA264_07560 0.33 -1.1
1,753,517 - CA264_07560 0.34 -0.5
1,753,574 + CA264_07560 0.36 +0.4
1,753,679 - CA264_07560 0.41 -0.2

Or see this region's nucleotide sequence