Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_06055

Experiment: m.b. benzoic 0.4 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_06050 and CA264_06055 are separated by 218 nucleotidesCA264_06055 and CA264_06060 are separated by 218 nucleotides CA264_06050: CA264_06050 - ATP-dependent RNA helicase, at 1,413,645 to 1,415,021 _06050 CA264_06055: CA264_06055 - DNA recombination protein RmuC, at 1,415,240 to 1,416,565 _06055 CA264_06060: CA264_06060 - peptidase, at 1,416,784 to 1,418,613 _06060 Position (kb) 1415 1416 1417Strain fitness (log2 ratio) -2 -1 0 1 2at 1414.256 kb on - strand, within CA264_06050at 1414.294 kb on - strand, within CA264_06050at 1414.419 kb on + strand, within CA264_06050at 1414.420 kb on - strand, within CA264_06050at 1414.431 kb on + strand, within CA264_06050at 1414.561 kb on + strand, within CA264_06050at 1414.561 kb on + strandat 1414.562 kb on - strand, within CA264_06050at 1414.562 kb on - strand, within CA264_06050at 1414.562 kb on - strand, within CA264_06050at 1414.588 kb on - strand, within CA264_06050at 1414.666 kb on - strand, within CA264_06050at 1414.676 kb on - strand, within CA264_06050at 1414.724 kb on - strand, within CA264_06050at 1414.728 kb on - strand, within CA264_06050at 1414.777 kb on + strand, within CA264_06050at 1414.777 kb on + strand, within CA264_06050at 1414.777 kb on + strand, within CA264_06050at 1414.985 kb on - strandat 1415.005 kb on + strandat 1415.005 kb on + strandat 1415.005 kb on + strandat 1415.006 kb on - strandat 1415.006 kb on - strandat 1415.006 kb on - strandat 1415.010 kb on + strandat 1415.011 kb on - strandat 1415.011 kb on - strandat 1415.037 kb on - strandat 1415.038 kb on + strandat 1415.077 kb on + strandat 1415.078 kb on - strandat 1415.112 kb on + strandat 1415.112 kb on + strandat 1415.113 kb on - strandat 1415.145 kb on + strandat 1415.146 kb on - strandat 1415.146 kb on - strandat 1415.175 kb on - strandat 1415.175 kb on - strandat 1415.218 kb on + strandat 1415.229 kb on - strandat 1415.229 kb on - strandat 1415.248 kb on - strandat 1415.258 kb on - strandat 1415.350 kb on - strandat 1415.351 kb on - strandat 1415.407 kb on - strand, within CA264_06055at 1415.722 kb on + strand, within CA264_06055at 1415.722 kb on + strand, within CA264_06055at 1415.928 kb on - strand, within CA264_06055at 1415.972 kb on - strand, within CA264_06055at 1415.972 kb on - strand, within CA264_06055at 1416.046 kb on - strand, within CA264_06055at 1416.153 kb on - strand, within CA264_06055at 1416.210 kb on + strand, within CA264_06055at 1416.210 kb on + strand, within CA264_06055at 1416.211 kb on - strand, within CA264_06055at 1416.633 kb on + strandat 1416.634 kb on - strandat 1416.634 kb on - strandat 1416.647 kb on - strandat 1416.648 kb on + strandat 1416.706 kb on + strandat 1416.707 kb on - strandat 1416.752 kb on + strandat 1416.753 kb on - strandat 1416.754 kb on + strandat 1416.758 kb on - strandat 1416.770 kb on - strandat 1416.770 kb on - strandat 1416.777 kb on + strandat 1416.937 kb on + strandat 1416.949 kb on + strandat 1416.949 kb on + strandat 1416.982 kb on - strand, within CA264_06060at 1416.982 kb on - strand, within CA264_06060at 1416.982 kb on - strand, within CA264_06060at 1417.130 kb on + strand, within CA264_06060at 1417.130 kb on + strand, within CA264_06060at 1417.131 kb on - strand, within CA264_06060at 1417.149 kb on - strand, within CA264_06060at 1417.182 kb on - strand, within CA264_06060at 1417.294 kb on - strand, within CA264_06060at 1417.426 kb on + strand, within CA264_06060at 1417.436 kb on - strand, within CA264_06060at 1417.543 kb on + strand, within CA264_06060at 1417.544 kb on - strand, within CA264_06060

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. benzoic 0.4 mg/ml
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1,414,256 - CA264_06050 0.44 +0.5
1,414,294 - CA264_06050 0.47 -0.1
1,414,419 + CA264_06050 0.56 +0.4
1,414,420 - CA264_06050 0.56 +0.4
1,414,431 + CA264_06050 0.57 -0.4
1,414,561 + CA264_06050 0.67 +0.4
1,414,561 + +2.3
1,414,562 - CA264_06050 0.67 +0.7
1,414,562 - CA264_06050 0.67 -0.3
1,414,562 - CA264_06050 0.67 -0.2
1,414,588 - CA264_06050 0.68 +0.5
1,414,666 - CA264_06050 0.74 +0.1
1,414,676 - CA264_06050 0.75 -0.3
1,414,724 - CA264_06050 0.78 -0.8
1,414,728 - CA264_06050 0.79 -1.1
1,414,777 + CA264_06050 0.82 -0.1
1,414,777 + CA264_06050 0.82 +2.3
1,414,777 + CA264_06050 0.82 -0.3
1,414,985 - +0.2
1,415,005 + +0.1
1,415,005 + +0.1
1,415,005 + +0.1
1,415,006 - -0.8
1,415,006 - -0.6
1,415,006 - +2.3
1,415,010 + -0.1
1,415,011 - -0.4
1,415,011 - +0.5
1,415,037 - -0.0
1,415,038 + -0.9
1,415,077 + -0.2
1,415,078 - +0.3
1,415,112 + +0.3
1,415,112 + -0.6
1,415,113 - +0.2
1,415,145 + +0.7
1,415,146 - -1.9
1,415,146 - -0.4
1,415,175 - -0.4
1,415,175 - -0.3
1,415,218 + -1.3
1,415,229 - -0.0
1,415,229 - +0.5
1,415,248 - -0.5
1,415,258 - -0.2
1,415,350 - +0.6
1,415,351 - -1.1
1,415,407 - CA264_06055 0.13 -0.1
1,415,722 + CA264_06055 0.36 -0.3
1,415,722 + CA264_06055 0.36 -0.0
1,415,928 - CA264_06055 0.52 -0.1
1,415,972 - CA264_06055 0.55 -0.5
1,415,972 - CA264_06055 0.55 -0.2
1,416,046 - CA264_06055 0.61 +1.0
1,416,153 - CA264_06055 0.69 -0.9
1,416,210 + CA264_06055 0.73 +0.3
1,416,210 + CA264_06055 0.73 -0.5
1,416,211 - CA264_06055 0.73 +0.1
1,416,633 + -0.3
1,416,634 - +0.3
1,416,634 - -0.3
1,416,647 - +0.2
1,416,648 + -1.2
1,416,706 + -1.3
1,416,707 - -0.3
1,416,752 + +0.3
1,416,753 - +0.4
1,416,754 + +0.4
1,416,758 - -1.1
1,416,770 - -1.0
1,416,770 - +0.5
1,416,777 + -0.4
1,416,937 + -0.0
1,416,949 + +0.6
1,416,949 + -0.6
1,416,982 - CA264_06060 0.11 +0.9
1,416,982 - CA264_06060 0.11 +0.8
1,416,982 - CA264_06060 0.11 +1.9
1,417,130 + CA264_06060 0.19 +1.3
1,417,130 + CA264_06060 0.19 -0.2
1,417,131 - CA264_06060 0.19 +0.1
1,417,149 - CA264_06060 0.20 +0.0
1,417,182 - CA264_06060 0.22 -0.2
1,417,294 - CA264_06060 0.28 +0.1
1,417,426 + CA264_06060 0.35 -0.7
1,417,436 - CA264_06060 0.36 +0.1
1,417,543 + CA264_06060 0.41 +0.3
1,417,544 - CA264_06060 0.42 +0.0

Or see this region's nucleotide sequence