Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_02280

Experiment: m.b. benzoic 0.4 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_02275 and CA264_02280 are separated by 19 nucleotidesCA264_02280 and CA264_02285 are separated by 158 nucleotidesCA264_02285 and CA264_02290 are separated by 295 nucleotides CA264_02275: CA264_02275 - sigma-54-dependent Fis family transcriptional regulator, at 527,685 to 529,067 _02275 CA264_02280: CA264_02280 - ATP-binding protein, at 529,087 to 530,442 _02280 CA264_02285: CA264_02285 - thiol reductase thioredoxin, at 530,601 to 530,906 _02285 CA264_02290: CA264_02290 - hypothetical protein, at 531,202 to 531,528 _02290 Position (kb) 529 530 531Strain fitness (log2 ratio) -2 -1 0 1 2at 528.217 kb on + strand, within CA264_02275at 528.217 kb on + strand, within CA264_02275at 528.218 kb on - strand, within CA264_02275at 528.218 kb on - strand, within CA264_02275at 528.717 kb on + strand, within CA264_02275at 528.717 kb on + strand, within CA264_02275at 528.825 kb on - strand, within CA264_02275at 528.864 kb on + strand, within CA264_02275at 528.914 kb on + strand, within CA264_02275at 529.015 kb on + strandat 529.015 kb on + strandat 529.124 kb on + strandat 529.125 kb on - strandat 529.156 kb on + strandat 529.156 kb on + strandat 529.156 kb on + strandat 529.157 kb on - strandat 529.160 kb on + strandat 529.161 kb on - strandat 529.193 kb on - strandat 529.202 kb on - strandat 529.327 kb on + strand, within CA264_02280at 529.391 kb on - strand, within CA264_02280at 529.391 kb on - strand, within CA264_02280at 529.432 kb on - strand, within CA264_02280at 529.433 kb on + strand, within CA264_02280at 529.433 kb on + strand, within CA264_02280at 529.433 kb on + strand, within CA264_02280at 529.433 kb on + strand, within CA264_02280at 529.433 kb on + strand, within CA264_02280at 529.433 kb on + strand, within CA264_02280at 529.434 kb on - strand, within CA264_02280at 529.434 kb on - strand, within CA264_02280at 529.434 kb on - strand, within CA264_02280at 529.438 kb on - strand, within CA264_02280at 529.438 kb on - strand, within CA264_02280at 529.561 kb on + strand, within CA264_02280at 529.562 kb on - strand, within CA264_02280at 529.814 kb on + strand, within CA264_02280at 529.854 kb on + strand, within CA264_02280at 530.186 kb on + strand, within CA264_02280at 530.196 kb on + strand, within CA264_02280at 530.196 kb on + strand, within CA264_02280at 530.349 kb on - strandat 530.379 kb on + strandat 530.380 kb on - strandat 530.380 kb on - strandat 530.408 kb on + strandat 530.455 kb on + strandat 530.455 kb on + strandat 530.492 kb on - strandat 530.504 kb on + strandat 530.551 kb on + strandat 530.588 kb on + strandat 530.588 kb on + strandat 530.589 kb on - strandat 530.589 kb on - strandat 530.594 kb on + strandat 530.595 kb on - strandat 530.595 kb on - strandat 530.714 kb on + strand, within CA264_02285at 530.745 kb on + strand, within CA264_02285at 530.745 kb on + strand, within CA264_02285at 530.745 kb on + strand, within CA264_02285at 530.745 kb on + strand, within CA264_02285at 530.745 kb on + strand, within CA264_02285at 530.752 kb on - strand, within CA264_02285at 530.766 kb on + strand, within CA264_02285at 530.766 kb on + strand, within CA264_02285at 530.767 kb on - strand, within CA264_02285at 530.791 kb on - strand, within CA264_02285at 530.842 kb on + strand, within CA264_02285at 530.909 kb on + strandat 530.909 kb on + strandat 530.910 kb on - strandat 530.929 kb on + strandat 530.930 kb on - strandat 530.935 kb on + strandat 530.955 kb on + strandat 530.955 kb on + strandat 530.955 kb on + strandat 530.955 kb on + strandat 530.955 kb on + strandat 530.955 kb on + strandat 530.956 kb on - strandat 530.956 kb on - strandat 530.956 kb on - strandat 530.997 kb on - strandat 531.016 kb on - strandat 531.043 kb on - strandat 531.131 kb on - strandat 531.131 kb on - strandat 531.201 kb on + strandat 531.235 kb on - strand, within CA264_02290at 531.237 kb on - strand, within CA264_02290at 531.242 kb on + strand, within CA264_02290at 531.243 kb on - strand, within CA264_02290at 531.243 kb on - strand, within CA264_02290at 531.280 kb on - strand, within CA264_02290at 531.386 kb on - strand, within CA264_02290at 531.389 kb on - strand, within CA264_02290at 531.389 kb on - strand, within CA264_02290

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. benzoic 0.4 mg/ml
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528,217 + CA264_02275 0.38 +0.4
528,217 + CA264_02275 0.38 -1.0
528,218 - CA264_02275 0.39 -0.3
528,218 - CA264_02275 0.39 +0.9
528,717 + CA264_02275 0.75 -0.4
528,717 + CA264_02275 0.75 +0.7
528,825 - CA264_02275 0.82 -0.7
528,864 + CA264_02275 0.85 -0.5
528,914 + CA264_02275 0.89 +1.9
529,015 + -0.3
529,015 + -1.4
529,124 + +0.0
529,125 - -1.7
529,156 + -0.4
529,156 + +0.6
529,156 + -0.1
529,157 - -0.1
529,160 + -0.6
529,161 - +0.9
529,193 - -0.6
529,202 - -0.4
529,327 + CA264_02280 0.18 +0.0
529,391 - CA264_02280 0.22 +0.9
529,391 - CA264_02280 0.22 -1.1
529,432 - CA264_02280 0.25 -0.2
529,433 + CA264_02280 0.26 -1.1
529,433 + CA264_02280 0.26 +0.6
529,433 + CA264_02280 0.26 -0.1
529,433 + CA264_02280 0.26 +2.0
529,433 + CA264_02280 0.26 +1.0
529,433 + CA264_02280 0.26 -1.5
529,434 - CA264_02280 0.26 -0.5
529,434 - CA264_02280 0.26 -2.1
529,434 - CA264_02280 0.26 +0.1
529,438 - CA264_02280 0.26 +0.5
529,438 - CA264_02280 0.26 +0.9
529,561 + CA264_02280 0.35 -1.6
529,562 - CA264_02280 0.35 -0.5
529,814 + CA264_02280 0.54 -0.5
529,854 + CA264_02280 0.57 +0.1
530,186 + CA264_02280 0.81 -0.5
530,196 + CA264_02280 0.82 +0.1
530,196 + CA264_02280 0.82 +0.5
530,349 - -0.6
530,379 + -0.1
530,380 - -0.6
530,380 - -0.5
530,408 + -0.2
530,455 + -0.3
530,455 + +0.1
530,492 - +0.9
530,504 + +1.7
530,551 + +0.6
530,588 + -1.7
530,588 + -0.1
530,589 - +0.0
530,589 - +0.8
530,594 + -0.8
530,595 - -0.1
530,595 - -0.0
530,714 + CA264_02285 0.37 +1.2
530,745 + CA264_02285 0.47 -0.1
530,745 + CA264_02285 0.47 +1.2
530,745 + CA264_02285 0.47 +0.1
530,745 + CA264_02285 0.47 +0.9
530,745 + CA264_02285 0.47 -0.6
530,752 - CA264_02285 0.49 -0.2
530,766 + CA264_02285 0.54 +0.1
530,766 + CA264_02285 0.54 -0.7
530,767 - CA264_02285 0.54 +0.4
530,791 - CA264_02285 0.62 +0.6
530,842 + CA264_02285 0.79 -0.0
530,909 + +0.0
530,909 + +0.9
530,910 - -0.8
530,929 + -1.1
530,930 - -0.5
530,935 + -1.7
530,955 + -0.3
530,955 + +0.7
530,955 + -0.0
530,955 + -1.6
530,955 + -0.1
530,955 + -0.0
530,956 - +0.7
530,956 - +0.9
530,956 - -0.6
530,997 - -0.1
531,016 - +0.3
531,043 - -0.3
531,131 - -0.8
531,131 - +0.2
531,201 + +0.5
531,235 - CA264_02290 0.10 -0.1
531,237 - CA264_02290 0.11 -0.5
531,242 + CA264_02290 0.12 -1.6
531,243 - CA264_02290 0.13 +0.1
531,243 - CA264_02290 0.13 +0.1
531,280 - CA264_02290 0.24 +0.2
531,386 - CA264_02290 0.56 +0.3
531,389 - CA264_02290 0.57 -1.4
531,389 - CA264_02290 0.57 +1.9

Or see this region's nucleotide sequence