Experiment: m.b. benzoic 0.4 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_01935 and CA264_01940 are separated by 626 nucleotides CA264_01940 and CA264_01945 are separated by 146 nucleotides
CA264_01935: CA264_01935 - DNA-binding response regulator, at 449,246 to 449,884
_01935
CA264_01940: CA264_01940 - antibiotic biosynthesis monooxygenase, at 450,511 to 450,801
_01940
CA264_01945: CA264_01945 - hypothetical protein, at 450,948 to 451,724
_01945
Position (kb) 450
451 Strain fitness (log2 ratio) -2
-1
0
1 at 449.552 kb on + strand, within CA264_01935 at 449.553 kb on - strand, within CA264_01935 at 449.566 kb on - strand, within CA264_01935 at 449.623 kb on + strand, within CA264_01935 at 449.623 kb on + strand, within CA264_01935 at 449.653 kb on + strand, within CA264_01935 at 449.653 kb on + strand, within CA264_01935 at 449.732 kb on - strand, within CA264_01935 at 449.782 kb on + strand, within CA264_01935 at 449.782 kb on + strand, within CA264_01935 at 449.794 kb on + strand, within CA264_01935 at 449.801 kb on - strand, within CA264_01935 at 449.820 kb on + strand, within CA264_01935 at 449.820 kb on + strand, within CA264_01935 at 449.869 kb on - strand at 449.869 kb on - strand at 449.896 kb on - strand at 449.941 kb on + strand at 449.943 kb on + strand at 449.943 kb on + strand at 449.943 kb on + strand at 449.943 kb on + strand at 449.944 kb on - strand at 449.944 kb on - strand at 449.947 kb on + strand at 449.947 kb on + strand at 450.057 kb on - strand at 450.074 kb on + strand at 450.081 kb on - strand at 450.081 kb on - strand at 450.081 kb on - strand at 450.084 kb on + strand at 450.111 kb on + strand at 450.112 kb on - strand at 450.112 kb on - strand at 450.151 kb on + strand at 450.152 kb on - strand at 450.185 kb on + strand at 450.185 kb on + strand at 450.330 kb on - strand at 450.350 kb on + strand at 450.351 kb on - strand at 450.389 kb on - strand at 450.391 kb on - strand at 450.439 kb on + strand at 450.512 kb on + strand at 450.580 kb on + strand, within CA264_01940 at 450.581 kb on - strand, within CA264_01940 at 450.644 kb on + strand, within CA264_01940 at 450.654 kb on - strand, within CA264_01940 at 450.771 kb on + strand, within CA264_01940 at 450.802 kb on - strand at 450.810 kb on + strand at 450.811 kb on - strand at 450.867 kb on + strand at 450.868 kb on - strand at 450.900 kb on + strand at 450.901 kb on - strand at 450.910 kb on + strand at 450.911 kb on - strand at 451.057 kb on + strand, within CA264_01945 at 451.402 kb on - strand, within CA264_01945 at 451.421 kb on - strand, within CA264_01945 at 451.462 kb on + strand, within CA264_01945 at 451.490 kb on - strand, within CA264_01945 at 451.502 kb on + strand, within CA264_01945 at 451.577 kb on - strand, within CA264_01945 at 451.597 kb on + strand, within CA264_01945 at 451.689 kb on - strand at 451.717 kb on - strand at 451.717 kb on - strand at 451.728 kb on - strand at 451.735 kb on - strand at 451.800 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. benzoic 0.4 mg/ml remove 449,552 + CA264_01935 0.48 +0.1 449,553 - CA264_01935 0.48 +0.3 449,566 - CA264_01935 0.50 -0.3 449,623 + CA264_01935 0.59 -0.7 449,623 + CA264_01935 0.59 -0.3 449,653 + CA264_01935 0.64 +0.2 449,653 + CA264_01935 0.64 -0.2 449,732 - CA264_01935 0.76 +1.1 449,782 + CA264_01935 0.84 +0.4 449,782 + CA264_01935 0.84 -0.1 449,794 + CA264_01935 0.86 +0.1 449,801 - CA264_01935 0.87 +0.3 449,820 + CA264_01935 0.90 -1.6 449,820 + CA264_01935 0.90 -1.3 449,869 - -0.8 449,869 - +0.3 449,896 - -1.1 449,941 + -0.4 449,943 + -0.5 449,943 + +0.9 449,943 + +0.2 449,943 + +0.5 449,944 - +0.2 449,944 - -0.4 449,947 + -0.0 449,947 + -1.1 450,057 - +1.4 450,074 + +0.1 450,081 - -1.0 450,081 - +0.2 450,081 - +0.2 450,084 + -0.4 450,111 + -0.4 450,112 - +0.2 450,112 - +0.4 450,151 + +0.0 450,152 - +0.6 450,185 + -0.5 450,185 + +0.6 450,330 - +0.3 450,350 + -0.1 450,351 - +0.6 450,389 - -0.2 450,391 - +0.5 450,439 + -0.1 450,512 + -2.3 450,580 + CA264_01940 0.24 -1.0 450,581 - CA264_01940 0.24 -1.4 450,644 + CA264_01940 0.46 -0.6 450,654 - CA264_01940 0.49 -0.5 450,771 + CA264_01940 0.89 -0.6 450,802 - -0.5 450,810 + -0.2 450,811 - +0.1 450,867 + +0.0 450,868 - +0.4 450,900 + -0.3 450,901 - -0.1 450,910 + +0.7 450,911 - +0.3 451,057 + CA264_01945 0.14 +0.4 451,402 - CA264_01945 0.58 -0.5 451,421 - CA264_01945 0.61 +1.6 451,462 + CA264_01945 0.66 +0.1 451,490 - CA264_01945 0.70 -1.1 451,502 + CA264_01945 0.71 -0.2 451,577 - CA264_01945 0.81 +0.2 451,597 + CA264_01945 0.84 -0.7 451,689 - -0.2 451,717 - +0.4 451,717 - +0.8 451,728 - -0.6 451,735 - -0.0 451,800 + -0.6
Or see this region's nucleotide sequence