Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_01095

Experiment: m.b. benzoic 0.4 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_01085 and CA264_01090 are separated by 2 nucleotidesCA264_01090 and CA264_01095 are separated by 323 nucleotidesCA264_01095 and CA264_01100 are separated by 244 nucleotidesCA264_01100 and CA264_01105 are separated by 18 nucleotides CA264_01085: CA264_01085 - hypothetical protein, at 238,338 to 238,883 _01085 CA264_01090: CA264_01090 - hypothetical protein, at 238,886 to 239,275 _01090 CA264_01095: CA264_01095 - S9 family peptidase, at 239,599 to 241,761 _01095 CA264_01100: CA264_01100 - Clp protease ClpS, at 242,006 to 242,293 _01100 CA264_01105: CA264_01105 - recombination protein RecR, at 242,312 to 242,920 _01105 Position (kb) 239 240 241 242Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 238.729 kb on + strand, within CA264_01085at 238.730 kb on - strand, within CA264_01085at 238.758 kb on + strand, within CA264_01085at 238.758 kb on + strand, within CA264_01085at 238.759 kb on - strand, within CA264_01085at 238.765 kb on + strand, within CA264_01085at 238.773 kb on + strand, within CA264_01085at 238.773 kb on + strand, within CA264_01085at 238.773 kb on + strand, within CA264_01085at 238.774 kb on - strand, within CA264_01085at 238.774 kb on - strand, within CA264_01085at 238.878 kb on - strandat 238.878 kb on - strandat 238.883 kb on + strandat 238.884 kb on - strandat 238.884 kb on - strandat 238.887 kb on + strandat 238.887 kb on + strandat 238.888 kb on - strandat 238.953 kb on - strand, within CA264_01090at 239.000 kb on - strand, within CA264_01090at 239.034 kb on - strand, within CA264_01090at 239.139 kb on + strand, within CA264_01090at 239.139 kb on + strand, within CA264_01090at 239.140 kb on - strand, within CA264_01090at 239.149 kb on + strand, within CA264_01090at 239.149 kb on + strand, within CA264_01090at 239.235 kb on + strand, within CA264_01090at 239.268 kb on + strandat 239.269 kb on - strandat 239.269 kb on - strandat 239.269 kb on - strandat 239.288 kb on + strandat 239.301 kb on + strandat 239.301 kb on + strandat 239.302 kb on - strandat 239.346 kb on + strandat 239.347 kb on - strandat 239.406 kb on + strandat 239.406 kb on + strandat 239.411 kb on + strandat 239.519 kb on - strandat 239.544 kb on + strandat 239.547 kb on + strandat 239.548 kb on - strandat 239.548 kb on - strandat 239.548 kb on - strandat 239.694 kb on - strandat 239.705 kb on - strandat 239.809 kb on + strandat 239.895 kb on - strand, within CA264_01095at 239.898 kb on - strand, within CA264_01095at 239.932 kb on + strand, within CA264_01095at 239.932 kb on + strand, within CA264_01095at 240.045 kb on - strand, within CA264_01095at 240.145 kb on + strand, within CA264_01095at 240.159 kb on + strand, within CA264_01095at 240.161 kb on + strand, within CA264_01095at 240.162 kb on - strand, within CA264_01095at 240.245 kb on + strand, within CA264_01095at 240.246 kb on - strand, within CA264_01095at 240.251 kb on + strand, within CA264_01095at 240.251 kb on + strand, within CA264_01095at 240.266 kb on + strand, within CA264_01095at 240.266 kb on + strand, within CA264_01095at 240.311 kb on + strand, within CA264_01095at 240.312 kb on - strand, within CA264_01095at 240.464 kb on + strand, within CA264_01095at 240.465 kb on - strand, within CA264_01095at 240.479 kb on + strand, within CA264_01095at 240.605 kb on + strand, within CA264_01095at 240.605 kb on + strand, within CA264_01095at 240.605 kb on + strand, within CA264_01095at 240.606 kb on - strand, within CA264_01095at 240.609 kb on - strand, within CA264_01095at 240.610 kb on + strand, within CA264_01095at 240.610 kb on + strand, within CA264_01095at 240.611 kb on - strand, within CA264_01095at 240.611 kb on - strand, within CA264_01095at 240.640 kb on + strand, within CA264_01095at 240.702 kb on - strand, within CA264_01095at 240.708 kb on - strand, within CA264_01095at 240.709 kb on + strand, within CA264_01095at 240.709 kb on + strand, within CA264_01095at 240.710 kb on - strand, within CA264_01095at 240.774 kb on - strand, within CA264_01095at 240.797 kb on + strand, within CA264_01095at 240.797 kb on + strand, within CA264_01095at 240.854 kb on + strand, within CA264_01095at 240.855 kb on - strand, within CA264_01095at 240.862 kb on - strand, within CA264_01095at 240.902 kb on + strand, within CA264_01095at 241.001 kb on + strand, within CA264_01095at 241.001 kb on + strand, within CA264_01095at 241.050 kb on + strand, within CA264_01095at 241.050 kb on + strand, within CA264_01095at 241.051 kb on - strand, within CA264_01095at 241.127 kb on + strand, within CA264_01095at 241.128 kb on - strand, within CA264_01095at 241.128 kb on - strand, within CA264_01095at 241.208 kb on + strand, within CA264_01095at 241.326 kb on + strand, within CA264_01095at 241.327 kb on - strand, within CA264_01095at 241.346 kb on + strand, within CA264_01095at 241.346 kb on + strand, within CA264_01095at 241.465 kb on - strand, within CA264_01095at 241.583 kb on + strandat 241.583 kb on + strandat 241.714 kb on + strandat 241.714 kb on + strandat 241.715 kb on - strandat 241.762 kb on - strandat 241.773 kb on - strandat 241.775 kb on - strandat 241.775 kb on - strandat 241.813 kb on - strandat 241.814 kb on + strandat 241.869 kb on - strandat 241.878 kb on + strandat 241.898 kb on + strandat 241.899 kb on - strandat 241.900 kb on + strandat 241.901 kb on - strandat 241.901 kb on - strandat 241.925 kb on + strandat 241.925 kb on + strandat 241.927 kb on + strandat 241.928 kb on - strandat 241.954 kb on + strandat 241.954 kb on + strandat 241.954 kb on + strandat 241.955 kb on - strandat 241.955 kb on - strandat 241.955 kb on - strandat 241.956 kb on + strandat 241.957 kb on - strandat 241.967 kb on + strandat 241.968 kb on - strandat 241.968 kb on - strandat 241.968 kb on - strandat 242.003 kb on - strandat 242.023 kb on + strandat 242.023 kb on + strandat 242.093 kb on + strand, within CA264_01100at 242.095 kb on + strand, within CA264_01100at 242.125 kb on - strand, within CA264_01100at 242.125 kb on - strand, within CA264_01100at 242.125 kb on - strand, within CA264_01100at 242.145 kb on + strand, within CA264_01100at 242.145 kb on + strand, within CA264_01100at 242.146 kb on - strand, within CA264_01100at 242.179 kb on + strand, within CA264_01100at 242.210 kb on - strand, within CA264_01100at 242.214 kb on + strand, within CA264_01100at 242.229 kb on - strand, within CA264_01100at 242.246 kb on - strand, within CA264_01100at 242.285 kb on - strandat 242.286 kb on + strandat 242.287 kb on - strandat 242.291 kb on + strandat 242.292 kb on - strandat 242.292 kb on - strandat 242.305 kb on - strandat 242.305 kb on - strandat 242.612 kb on + strand, within CA264_01105at 242.624 kb on + strand, within CA264_01105at 242.664 kb on + strand, within CA264_01105at 242.665 kb on - strand, within CA264_01105at 242.665 kb on - strand, within CA264_01105at 242.736 kb on + strand, within CA264_01105

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. benzoic 0.4 mg/ml
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238,729 + CA264_01085 0.72 +1.5
238,730 - CA264_01085 0.72 +0.2
238,758 + CA264_01085 0.77 +1.0
238,758 + CA264_01085 0.77 +0.2
238,759 - CA264_01085 0.77 -0.9
238,765 + CA264_01085 0.78 -0.6
238,773 + CA264_01085 0.80 +0.0
238,773 + CA264_01085 0.80 -2.4
238,773 + CA264_01085 0.80 +1.0
238,774 - CA264_01085 0.80 -0.9
238,774 - CA264_01085 0.80 +0.2
238,878 - +0.4
238,878 - -0.0
238,883 + +1.0
238,884 - -0.1
238,884 - +0.4
238,887 + -2.9
238,887 + -0.1
238,888 - -1.9
238,953 - CA264_01090 0.17 -1.6
239,000 - CA264_01090 0.29 +1.0
239,034 - CA264_01090 0.38 +0.4
239,139 + CA264_01090 0.65 -0.0
239,139 + CA264_01090 0.65 -0.2
239,140 - CA264_01090 0.65 -0.6
239,149 + CA264_01090 0.67 +1.0
239,149 + CA264_01090 0.67 +0.5
239,235 + CA264_01090 0.89 +0.4
239,268 + -0.1
239,269 - +2.3
239,269 - -0.2
239,269 - +0.1
239,288 + -0.5
239,301 + -0.1
239,301 + -1.2
239,302 - -1.0
239,346 + -0.9
239,347 - -0.4
239,406 + -0.4
239,406 + -0.2
239,411 + -0.6
239,519 - -1.6
239,544 + -0.7
239,547 + -0.6
239,548 - +0.2
239,548 - +1.0
239,548 - +0.3
239,694 - +0.6
239,705 - -1.4
239,809 + +1.0
239,895 - CA264_01095 0.14 -0.5
239,898 - CA264_01095 0.14 -0.6
239,932 + CA264_01095 0.15 -0.2
239,932 + CA264_01095 0.15 -1.0
240,045 - CA264_01095 0.21 +1.0
240,145 + CA264_01095 0.25 +0.6
240,159 + CA264_01095 0.26 -0.1
240,161 + CA264_01095 0.26 -0.0
240,162 - CA264_01095 0.26 -0.7
240,245 + CA264_01095 0.30 -0.4
240,246 - CA264_01095 0.30 +0.6
240,251 + CA264_01095 0.30 +0.4
240,251 + CA264_01095 0.30 -0.9
240,266 + CA264_01095 0.31 +0.2
240,266 + CA264_01095 0.31 -0.4
240,311 + CA264_01095 0.33 -0.5
240,312 - CA264_01095 0.33 -1.0
240,464 + CA264_01095 0.40 -0.6
240,465 - CA264_01095 0.40 -0.6
240,479 + CA264_01095 0.41 +0.0
240,605 + CA264_01095 0.47 +0.6
240,605 + CA264_01095 0.47 -1.0
240,605 + CA264_01095 0.47 +0.7
240,606 - CA264_01095 0.47 +0.0
240,609 - CA264_01095 0.47 -0.9
240,610 + CA264_01095 0.47 -0.9
240,610 + CA264_01095 0.47 +0.2
240,611 - CA264_01095 0.47 +0.2
240,611 - CA264_01095 0.47 +1.4
240,640 + CA264_01095 0.48 +0.3
240,702 - CA264_01095 0.51 -0.4
240,708 - CA264_01095 0.51 -1.1
240,709 + CA264_01095 0.51 +0.5
240,709 + CA264_01095 0.51 +0.4
240,710 - CA264_01095 0.51 -0.0
240,774 - CA264_01095 0.54 +1.4
240,797 + CA264_01095 0.55 +0.4
240,797 + CA264_01095 0.55 +0.3
240,854 + CA264_01095 0.58 -0.5
240,855 - CA264_01095 0.58 -0.5
240,862 - CA264_01095 0.58 -0.0
240,902 + CA264_01095 0.60 -0.3
241,001 + CA264_01095 0.65 -0.1
241,001 + CA264_01095 0.65 -0.4
241,050 + CA264_01095 0.67 -1.3
241,050 + CA264_01095 0.67 +0.2
241,051 - CA264_01095 0.67 +0.5
241,127 + CA264_01095 0.71 -0.2
241,128 - CA264_01095 0.71 -0.0
241,128 - CA264_01095 0.71 +1.5
241,208 + CA264_01095 0.74 +0.8
241,326 + CA264_01095 0.80 +1.1
241,327 - CA264_01095 0.80 -0.4
241,346 + CA264_01095 0.81 -1.6
241,346 + CA264_01095 0.81 +0.7
241,465 - CA264_01095 0.86 -0.4
241,583 + +0.1
241,583 + -0.0
241,714 + +0.2
241,714 + -0.5
241,715 - +0.2
241,762 - -0.1
241,773 - -0.9
241,775 - -0.4
241,775 - +0.5
241,813 - +0.5
241,814 + -0.9
241,869 - +0.2
241,878 + -0.8
241,898 + -0.0
241,899 - -0.9
241,900 + -0.1
241,901 - +1.0
241,901 - -0.0
241,925 + +0.4
241,925 + -0.2
241,927 + -0.2
241,928 - -0.0
241,954 + -0.0
241,954 + -0.0
241,954 + -0.9
241,955 - +0.4
241,955 - +3.0
241,955 - +0.4
241,956 + -0.1
241,957 - -0.6
241,967 + -0.3
241,968 - -0.3
241,968 - +0.6
241,968 - -0.4
242,003 - +1.7
242,023 + -0.9
242,023 + +0.1
242,093 + CA264_01100 0.30 -0.0
242,095 + CA264_01100 0.31 +0.7
242,125 - CA264_01100 0.41 -0.5
242,125 - CA264_01100 0.41 -0.0
242,125 - CA264_01100 0.41 +1.3
242,145 + CA264_01100 0.48 +0.2
242,145 + CA264_01100 0.48 +0.5
242,146 - CA264_01100 0.49 +0.0
242,179 + CA264_01100 0.60 +0.4
242,210 - CA264_01100 0.71 +1.0
242,214 + CA264_01100 0.72 -0.5
242,229 - CA264_01100 0.77 -1.0
242,246 - CA264_01100 0.83 -1.9
242,285 - -0.3
242,286 + -1.4
242,287 - -0.9
242,291 + -1.1
242,292 - -0.6
242,292 - -2.0
242,305 - -0.5
242,305 - +0.5
242,612 + CA264_01105 0.49 -0.6
242,624 + CA264_01105 0.51 -2.0
242,664 + CA264_01105 0.58 -0.6
242,665 - CA264_01105 0.58 -0.7
242,665 - CA264_01105 0.58 -1.4
242,736 + CA264_01105 0.70 -1.6

Or see this region's nucleotide sequence