Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_5144

Experiment: Benzethonium chloride 0.0125 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_5142 and PfGW456L13_5143 are separated by 49 nucleotidesPfGW456L13_5143 and PfGW456L13_5144 are separated by 106 nucleotidesPfGW456L13_5144 and PfGW456L13_5145 are separated by 173 nucleotides PfGW456L13_5142 - Flavohemoprotein (Hemoglobin-like protein) (Flavohemoglobin) (Nitric oxide dioxygenase) (EC 1.14.12.17), at 5,739,645 to 5,740,223 _5142 PfGW456L13_5143 - transcriptional regulator, MerR family, at 5,740,273 to 5,740,644 _5143 PfGW456L13_5144 - FIG00954870: hypothetical protein, at 5,740,751 to 5,741,095 _5144 PfGW456L13_5145 - 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31) (from data), at 5,741,269 to 5,742,156 _5145 Position (kb) 5740 5741 5742Strain fitness (log2 ratio) -2 -1 0 1 2at 5739.808 kb on - strand, within PfGW456L13_5142at 5739.888 kb on + strand, within PfGW456L13_5142at 5739.889 kb on - strand, within PfGW456L13_5142at 5739.969 kb on + strand, within PfGW456L13_5142at 5739.969 kb on + strand, within PfGW456L13_5142at 5739.969 kb on + strandat 5739.970 kb on - strand, within PfGW456L13_5142at 5739.970 kb on - strand, within PfGW456L13_5142at 5740.053 kb on + strand, within PfGW456L13_5142at 5740.053 kb on + strand, within PfGW456L13_5142at 5740.054 kb on - strand, within PfGW456L13_5142at 5740.057 kb on - strand, within PfGW456L13_5142at 5740.208 kb on + strandat 5740.276 kb on + strandat 5740.276 kb on + strandat 5740.276 kb on + strandat 5740.276 kb on + strandat 5740.277 kb on - strandat 5740.277 kb on - strandat 5740.277 kb on - strandat 5740.277 kb on - strandat 5740.277 kb on - strandat 5740.277 kb on - strandat 5740.277 kb on - strandat 5740.375 kb on + strand, within PfGW456L13_5143at 5740.375 kb on + strand, within PfGW456L13_5143at 5740.375 kb on + strand, within PfGW456L13_5143at 5740.376 kb on - strand, within PfGW456L13_5143at 5740.384 kb on + strand, within PfGW456L13_5143at 5740.384 kb on + strand, within PfGW456L13_5143at 5740.384 kb on + strand, within PfGW456L13_5143at 5740.384 kb on + strand, within PfGW456L13_5143at 5740.384 kb on + strand, within PfGW456L13_5143at 5740.384 kb on + strand, within PfGW456L13_5143at 5740.384 kb on + strand, within PfGW456L13_5143at 5740.384 kb on + strand, within PfGW456L13_5143at 5740.384 kb on + strand, within PfGW456L13_5143at 5740.384 kb on + strand, within PfGW456L13_5143at 5740.385 kb on - strand, within PfGW456L13_5143at 5740.385 kb on - strand, within PfGW456L13_5143at 5740.385 kb on - strand, within PfGW456L13_5143at 5740.385 kb on - strand, within PfGW456L13_5143at 5740.494 kb on - strand, within PfGW456L13_5143at 5740.494 kb on - strand, within PfGW456L13_5143at 5740.494 kb on - strand, within PfGW456L13_5143at 5740.708 kb on + strandat 5740.708 kb on + strandat 5740.708 kb on + strandat 5740.708 kb on + strandat 5740.708 kb on + strandat 5740.709 kb on - strandat 5740.709 kb on - strandat 5740.709 kb on - strandat 5740.709 kb on - strandat 5740.765 kb on + strandat 5740.770 kb on + strandat 5740.770 kb on + strandat 5740.771 kb on - strandat 5740.860 kb on - strand, within PfGW456L13_5144at 5740.919 kb on + strand, within PfGW456L13_5144at 5740.919 kb on + strand, within PfGW456L13_5144at 5740.919 kb on + strand, within PfGW456L13_5144at 5740.919 kb on + strand, within PfGW456L13_5144at 5740.928 kb on + strand, within PfGW456L13_5144at 5740.928 kb on + strand, within PfGW456L13_5144at 5740.928 kb on + strand, within PfGW456L13_5144at 5740.928 kb on + strand, within PfGW456L13_5144at 5740.928 kb on + strand, within PfGW456L13_5144at 5740.929 kb on - strand, within PfGW456L13_5144at 5740.929 kb on - strand, within PfGW456L13_5144at 5740.929 kb on - strand, within PfGW456L13_5144at 5740.929 kb on - strand, within PfGW456L13_5144at 5740.929 kb on - strand, within PfGW456L13_5144at 5740.943 kb on + strand, within PfGW456L13_5144at 5740.943 kb on + strand, within PfGW456L13_5144at 5740.944 kb on - strand, within PfGW456L13_5144at 5740.964 kb on + strand, within PfGW456L13_5144at 5740.964 kb on + strand, within PfGW456L13_5144at 5741.079 kb on - strandat 5741.096 kb on + strandat 5741.139 kb on + strandat 5741.139 kb on + strandat 5741.140 kb on - strandat 5741.140 kb on - strandat 5741.150 kb on - strandat 5741.218 kb on + strandat 5741.270 kb on + strandat 5741.270 kb on + strandat 5741.271 kb on - strandat 5741.345 kb on + strandat 5741.345 kb on + strandat 5741.346 kb on - strandat 5741.346 kb on - strandat 5741.456 kb on + strand, within PfGW456L13_5145at 5741.457 kb on - strand, within PfGW456L13_5145at 5741.504 kb on + strand, within PfGW456L13_5145at 5741.504 kb on + strand, within PfGW456L13_5145at 5741.504 kb on + strand, within PfGW456L13_5145at 5741.504 kb on + strand, within PfGW456L13_5145at 5741.504 kb on + strand, within PfGW456L13_5145at 5741.504 kb on + strand, within PfGW456L13_5145at 5741.504 kb on + strand, within PfGW456L13_5145at 5741.505 kb on - strand, within PfGW456L13_5145at 5741.505 kb on - strand, within PfGW456L13_5145at 5741.505 kb on - strand, within PfGW456L13_5145at 5741.505 kb on - strand, within PfGW456L13_5145at 5741.505 kb on - strand, within PfGW456L13_5145at 5741.505 kb on - strand, within PfGW456L13_5145at 5741.505 kb on - strand, within PfGW456L13_5145at 5741.754 kb on + strand, within PfGW456L13_5145at 5741.755 kb on - strand, within PfGW456L13_5145at 5741.755 kb on - strand, within PfGW456L13_5145at 5741.755 kb on - strand, within PfGW456L13_5145at 5741.755 kb on - strand, within PfGW456L13_5145

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Per-strain Table

Position Strand Gene LocusTag Fraction Benzethonium chloride 0.0125 mM
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5,739,808 - PfGW456L13_5142 0.28 -0.3
5,739,888 + PfGW456L13_5142 0.42 -0.9
5,739,889 - PfGW456L13_5142 0.42 -1.3
5,739,969 + PfGW456L13_5142 0.56 +0.1
5,739,969 + PfGW456L13_5142 0.56 +0.5
5,739,969 + +2.3
5,739,970 - PfGW456L13_5142 0.56 +0.3
5,739,970 - PfGW456L13_5142 0.56 -0.4
5,740,053 + PfGW456L13_5142 0.70 -0.3
5,740,053 + PfGW456L13_5142 0.70 -0.0
5,740,054 - PfGW456L13_5142 0.71 -2.1
5,740,057 - PfGW456L13_5142 0.71 -0.1
5,740,208 + +0.0
5,740,276 + +0.1
5,740,276 + +0.2
5,740,276 + -0.0
5,740,276 + -0.1
5,740,277 - -0.4
5,740,277 - +0.2
5,740,277 - -0.1
5,740,277 - +0.4
5,740,277 - -0.6
5,740,277 - +0.6
5,740,277 - -0.4
5,740,375 + PfGW456L13_5143 0.27 +0.4
5,740,375 + PfGW456L13_5143 0.27 -0.7
5,740,375 + PfGW456L13_5143 0.27 +0.9
5,740,376 - PfGW456L13_5143 0.28 +0.1
5,740,384 + PfGW456L13_5143 0.30 +0.9
5,740,384 + PfGW456L13_5143 0.30 +0.6
5,740,384 + PfGW456L13_5143 0.30 -0.2
5,740,384 + PfGW456L13_5143 0.30 +0.7
5,740,384 + PfGW456L13_5143 0.30 -0.1
5,740,384 + PfGW456L13_5143 0.30 +1.0
5,740,384 + PfGW456L13_5143 0.30 +0.5
5,740,384 + PfGW456L13_5143 0.30 +0.1
5,740,384 + PfGW456L13_5143 0.30 +1.0
5,740,384 + PfGW456L13_5143 0.30 +0.2
5,740,385 - PfGW456L13_5143 0.30 +0.9
5,740,385 - PfGW456L13_5143 0.30 -1.3
5,740,385 - PfGW456L13_5143 0.30 -0.3
5,740,385 - PfGW456L13_5143 0.30 -0.1
5,740,494 - PfGW456L13_5143 0.59 +0.4
5,740,494 - PfGW456L13_5143 0.59 -0.5
5,740,494 - PfGW456L13_5143 0.59 -0.9
5,740,708 + +1.9
5,740,708 + -0.3
5,740,708 + -0.5
5,740,708 + +0.3
5,740,708 + +0.3
5,740,709 - +0.6
5,740,709 - -0.1
5,740,709 - -0.9
5,740,709 - +0.5
5,740,765 + -1.3
5,740,770 + +0.8
5,740,770 + +0.6
5,740,771 - +0.1
5,740,860 - PfGW456L13_5144 0.32 -0.4
5,740,919 + PfGW456L13_5144 0.49 +0.2
5,740,919 + PfGW456L13_5144 0.49 -0.3
5,740,919 + PfGW456L13_5144 0.49 +0.6
5,740,919 + PfGW456L13_5144 0.49 -1.1
5,740,928 + PfGW456L13_5144 0.51 -0.7
5,740,928 + PfGW456L13_5144 0.51 +1.1
5,740,928 + PfGW456L13_5144 0.51 -0.5
5,740,928 + PfGW456L13_5144 0.51 -1.1
5,740,928 + PfGW456L13_5144 0.51 -0.8
5,740,929 - PfGW456L13_5144 0.52 +0.2
5,740,929 - PfGW456L13_5144 0.52 +0.4
5,740,929 - PfGW456L13_5144 0.52 +0.9
5,740,929 - PfGW456L13_5144 0.52 +0.1
5,740,929 - PfGW456L13_5144 0.52 +0.3
5,740,943 + PfGW456L13_5144 0.56 +0.2
5,740,943 + PfGW456L13_5144 0.56 +0.0
5,740,944 - PfGW456L13_5144 0.56 -1.4
5,740,964 + PfGW456L13_5144 0.62 -1.3
5,740,964 + PfGW456L13_5144 0.62 -0.5
5,741,079 - -0.3
5,741,096 + +0.1
5,741,139 + -0.7
5,741,139 + -0.0
5,741,140 - +0.7
5,741,140 - -0.1
5,741,150 - -2.0
5,741,218 + +1.1
5,741,270 + +0.1
5,741,270 + -0.2
5,741,271 - +0.4
5,741,345 + -0.7
5,741,345 + +0.3
5,741,346 - +0.3
5,741,346 - -0.5
5,741,456 + PfGW456L13_5145 0.21 -0.2
5,741,457 - PfGW456L13_5145 0.21 -1.9
5,741,504 + PfGW456L13_5145 0.26 +0.9
5,741,504 + PfGW456L13_5145 0.26 -0.8
5,741,504 + PfGW456L13_5145 0.26 +0.3
5,741,504 + PfGW456L13_5145 0.26 +0.4
5,741,504 + PfGW456L13_5145 0.26 -0.1
5,741,504 + PfGW456L13_5145 0.26 -0.3
5,741,504 + PfGW456L13_5145 0.26 +0.2
5,741,505 - PfGW456L13_5145 0.27 -0.5
5,741,505 - PfGW456L13_5145 0.27 -0.8
5,741,505 - PfGW456L13_5145 0.27 +0.0
5,741,505 - PfGW456L13_5145 0.27 -0.2
5,741,505 - PfGW456L13_5145 0.27 +0.9
5,741,505 - PfGW456L13_5145 0.27 -1.1
5,741,505 - PfGW456L13_5145 0.27 -0.1
5,741,754 + PfGW456L13_5145 0.55 -0.3
5,741,755 - PfGW456L13_5145 0.55 +0.2
5,741,755 - PfGW456L13_5145 0.55 -0.8
5,741,755 - PfGW456L13_5145 0.55 -0.1
5,741,755 - PfGW456L13_5145 0.55 -0.4

Or see this region's nucleotide sequence