Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_3304

Experiment: Benzethonium chloride 0.0125 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_3303 and PfGW456L13_3304 overlap by 4 nucleotidesPfGW456L13_3304 and PfGW456L13_3305 overlap by 4 nucleotides PfGW456L13_3303 - BatA (Bacteroides aerotolerance operon), at 3,711,428 to 3,712,510 _3303 PfGW456L13_3304 - TPR domain protein in aerotolerance operon, at 3,712,507 to 3,714,240 _3304 PfGW456L13_3305 - BatD, at 3,714,237 to 3,715,886 _3305 Position (kb) 3712 3713 3714 3715Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3711.615 kb on + strand, within PfGW456L13_3303at 3711.615 kb on + strand, within PfGW456L13_3303at 3711.615 kb on + strand, within PfGW456L13_3303at 3711.615 kb on + strand, within PfGW456L13_3303at 3711.615 kb on + strand, within PfGW456L13_3303at 3711.864 kb on - strand, within PfGW456L13_3303at 3711.864 kb on - strand, within PfGW456L13_3303at 3712.229 kb on + strand, within PfGW456L13_3303at 3712.229 kb on + strand, within PfGW456L13_3303at 3712.230 kb on - strand, within PfGW456L13_3303at 3712.337 kb on + strand, within PfGW456L13_3303at 3712.337 kb on + strand, within PfGW456L13_3303at 3712.337 kb on + strand, within PfGW456L13_3303at 3712.337 kb on + strand, within PfGW456L13_3303at 3712.337 kb on + strand, within PfGW456L13_3303at 3712.338 kb on - strand, within PfGW456L13_3303at 3712.338 kb on - strand, within PfGW456L13_3303at 3712.338 kb on - strand, within PfGW456L13_3303at 3712.338 kb on - strand, within PfGW456L13_3303at 3712.338 kb on - strand, within PfGW456L13_3303at 3712.338 kb on - strand, within PfGW456L13_3303at 3712.681 kb on - strand, within PfGW456L13_3304at 3712.921 kb on + strand, within PfGW456L13_3304at 3712.922 kb on - strand, within PfGW456L13_3304at 3713.533 kb on + strand, within PfGW456L13_3304at 3713.534 kb on - strand, within PfGW456L13_3304at 3713.534 kb on - strand, within PfGW456L13_3304at 3713.589 kb on - strand, within PfGW456L13_3304at 3713.589 kb on - strand, within PfGW456L13_3304at 3713.589 kb on - strand, within PfGW456L13_3304at 3713.660 kb on - strand, within PfGW456L13_3304at 3713.726 kb on - strand, within PfGW456L13_3304at 3713.726 kb on - strand, within PfGW456L13_3304at 3713.782 kb on + strand, within PfGW456L13_3304at 3713.782 kb on + strand, within PfGW456L13_3304at 3713.868 kb on + strand, within PfGW456L13_3304at 3713.868 kb on + strand, within PfGW456L13_3304at 3713.869 kb on - strand, within PfGW456L13_3304at 3713.869 kb on - strand, within PfGW456L13_3304at 3714.199 kb on + strandat 3714.257 kb on - strandat 3714.257 kb on - strandat 3714.678 kb on + strand, within PfGW456L13_3305at 3714.678 kb on + strand, within PfGW456L13_3305at 3714.678 kb on + strand, within PfGW456L13_3305at 3714.678 kb on + strand, within PfGW456L13_3305at 3714.678 kb on + strand, within PfGW456L13_3305at 3714.733 kb on - strand, within PfGW456L13_3305at 3714.804 kb on + strand, within PfGW456L13_3305at 3714.805 kb on - strand, within PfGW456L13_3305at 3714.805 kb on - strandat 3714.934 kb on + strand, within PfGW456L13_3305at 3715.026 kb on + strand, within PfGW456L13_3305at 3715.027 kb on - strand, within PfGW456L13_3305

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Per-strain Table

Position Strand Gene LocusTag Fraction Benzethonium chloride 0.0125 mM
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3,711,615 + PfGW456L13_3303 0.17 -1.5
3,711,615 + PfGW456L13_3303 0.17 -3.1
3,711,615 + PfGW456L13_3303 0.17 -2.8
3,711,615 + PfGW456L13_3303 0.17 -3.0
3,711,615 + PfGW456L13_3303 0.17 -1.7
3,711,864 - PfGW456L13_3303 0.40 -4.2
3,711,864 - PfGW456L13_3303 0.40 -1.0
3,712,229 + PfGW456L13_3303 0.74 -2.7
3,712,229 + PfGW456L13_3303 0.74 -3.4
3,712,230 - PfGW456L13_3303 0.74 -0.7
3,712,337 + PfGW456L13_3303 0.84 -1.0
3,712,337 + PfGW456L13_3303 0.84 -1.6
3,712,337 + PfGW456L13_3303 0.84 -3.4
3,712,337 + PfGW456L13_3303 0.84 -3.0
3,712,337 + PfGW456L13_3303 0.84 -0.5
3,712,338 - PfGW456L13_3303 0.84 -2.5
3,712,338 - PfGW456L13_3303 0.84 -3.1
3,712,338 - PfGW456L13_3303 0.84 -3.3
3,712,338 - PfGW456L13_3303 0.84 -3.5
3,712,338 - PfGW456L13_3303 0.84 -1.5
3,712,338 - PfGW456L13_3303 0.84 -2.6
3,712,681 - PfGW456L13_3304 0.10 -3.1
3,712,921 + PfGW456L13_3304 0.24 -1.7
3,712,922 - PfGW456L13_3304 0.24 -0.1
3,713,533 + PfGW456L13_3304 0.59 -1.6
3,713,534 - PfGW456L13_3304 0.59 -2.5
3,713,534 - PfGW456L13_3304 0.59 -2.4
3,713,589 - PfGW456L13_3304 0.62 -2.6
3,713,589 - PfGW456L13_3304 0.62 -3.4
3,713,589 - PfGW456L13_3304 0.62 -3.0
3,713,660 - PfGW456L13_3304 0.66 -2.5
3,713,726 - PfGW456L13_3304 0.70 -3.7
3,713,726 - PfGW456L13_3304 0.70 -4.6
3,713,782 + PfGW456L13_3304 0.74 -1.3
3,713,782 + PfGW456L13_3304 0.74 -2.5
3,713,868 + PfGW456L13_3304 0.78 -2.6
3,713,868 + PfGW456L13_3304 0.78 -3.1
3,713,869 - PfGW456L13_3304 0.79 -2.6
3,713,869 - PfGW456L13_3304 0.79 -2.5
3,714,199 + -1.5
3,714,257 - -1.5
3,714,257 - -0.7
3,714,678 + PfGW456L13_3305 0.27 -1.5
3,714,678 + PfGW456L13_3305 0.27 -1.7
3,714,678 + PfGW456L13_3305 0.27 -3.8
3,714,678 + PfGW456L13_3305 0.27 -1.8
3,714,678 + PfGW456L13_3305 0.27 -3.1
3,714,733 - PfGW456L13_3305 0.30 -3.1
3,714,804 + PfGW456L13_3305 0.34 -2.0
3,714,805 - PfGW456L13_3305 0.34 -1.5
3,714,805 - -0.1
3,714,934 + PfGW456L13_3305 0.42 -2.1
3,715,026 + PfGW456L13_3305 0.48 -1.7
3,715,027 - PfGW456L13_3305 0.48 -2.7

Or see this region's nucleotide sequence