Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_3276

Experiment: Benzethonium chloride 0.0125 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_3274 and PfGW456L13_3275 overlap by 4 nucleotidesPfGW456L13_3275 and PfGW456L13_3276 overlap by 14 nucleotidesPfGW456L13_3276 and PfGW456L13_3277 are separated by 1 nucleotides PfGW456L13_3274 - hypothetical protein PA3071, at 3,677,855 to 3,678,790 _3274 PfGW456L13_3275 - FIG00985226: hypothetical protein, at 3,678,787 to 3,679,353 _3275 PfGW456L13_3276 - BatA (Bacteroides aerotolerance operon), at 3,679,340 to 3,680,332 _3276 PfGW456L13_3277 - TPR domain protein in aerotolerance operon, at 3,680,334 to 3,681,914 _3277 Position (kb) 3679 3680 3681Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3678.522 kb on + strand, within PfGW456L13_3274at 3678.522 kb on + strand, within PfGW456L13_3274at 3678.522 kb on + strand, within PfGW456L13_3274at 3678.522 kb on + strandat 3678.522 kb on + strand, within PfGW456L13_3274at 3678.522 kb on + strand, within PfGW456L13_3274at 3678.522 kb on + strand, within PfGW456L13_3274at 3678.522 kb on + strand, within PfGW456L13_3274at 3678.522 kb on + strand, within PfGW456L13_3274at 3678.523 kb on - strand, within PfGW456L13_3274at 3678.523 kb on - strand, within PfGW456L13_3274at 3678.523 kb on - strand, within PfGW456L13_3274at 3678.523 kb on - strand, within PfGW456L13_3274at 3678.523 kb on - strand, within PfGW456L13_3274at 3678.523 kb on - strand, within PfGW456L13_3274at 3678.523 kb on - strandat 3678.523 kb on - strand, within PfGW456L13_3274at 3678.523 kb on - strandat 3678.539 kb on + strand, within PfGW456L13_3274at 3678.539 kb on + strand, within PfGW456L13_3274at 3678.539 kb on + strand, within PfGW456L13_3274at 3678.540 kb on - strand, within PfGW456L13_3274at 3678.540 kb on - strand, within PfGW456L13_3274at 3678.540 kb on - strand, within PfGW456L13_3274at 3678.540 kb on - strand, within PfGW456L13_3274at 3678.540 kb on - strand, within PfGW456L13_3274at 3678.557 kb on - strand, within PfGW456L13_3274at 3678.798 kb on + strandat 3678.799 kb on - strandat 3678.850 kb on + strand, within PfGW456L13_3275at 3678.850 kb on + strand, within PfGW456L13_3275at 3678.850 kb on + strand, within PfGW456L13_3275at 3678.850 kb on + strand, within PfGW456L13_3275at 3678.850 kb on + strand, within PfGW456L13_3275at 3678.851 kb on - strand, within PfGW456L13_3275at 3678.851 kb on - strand, within PfGW456L13_3275at 3678.999 kb on + strandat 3679.056 kb on + strand, within PfGW456L13_3275at 3679.063 kb on + strand, within PfGW456L13_3275at 3679.204 kb on - strand, within PfGW456L13_3275at 3679.204 kb on - strand, within PfGW456L13_3275at 3679.252 kb on + strand, within PfGW456L13_3275at 3679.416 kb on - strandat 3679.444 kb on - strand, within PfGW456L13_3276at 3679.741 kb on + strand, within PfGW456L13_3276at 3679.741 kb on + strand, within PfGW456L13_3276at 3679.742 kb on - strand, within PfGW456L13_3276at 3679.742 kb on - strand, within PfGW456L13_3276at 3679.742 kb on - strand, within PfGW456L13_3276at 3679.828 kb on - strand, within PfGW456L13_3276at 3680.159 kb on + strand, within PfGW456L13_3276at 3680.159 kb on + strand, within PfGW456L13_3276at 3680.160 kb on - strand, within PfGW456L13_3276at 3680.270 kb on + strandat 3680.533 kb on + strand, within PfGW456L13_3277at 3680.533 kb on + strand, within PfGW456L13_3277at 3680.533 kb on + strand, within PfGW456L13_3277at 3680.534 kb on - strand, within PfGW456L13_3277at 3680.534 kb on - strand, within PfGW456L13_3277at 3680.534 kb on - strand, within PfGW456L13_3277at 3680.534 kb on - strand, within PfGW456L13_3277at 3680.534 kb on - strand, within PfGW456L13_3277at 3680.534 kb on - strand, within PfGW456L13_3277at 3680.534 kb on - strand, within PfGW456L13_3277at 3681.305 kb on - strand, within PfGW456L13_3277at 3681.305 kb on - strand, within PfGW456L13_3277

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Per-strain Table

Position Strand Gene LocusTag Fraction Benzethonium chloride 0.0125 mM
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3,678,522 + PfGW456L13_3274 0.71 -1.2
3,678,522 + PfGW456L13_3274 0.71 +1.1
3,678,522 + PfGW456L13_3274 0.71 -0.4
3,678,522 + +0.9
3,678,522 + PfGW456L13_3274 0.71 -0.6
3,678,522 + PfGW456L13_3274 0.71 +1.3
3,678,522 + PfGW456L13_3274 0.71 -0.1
3,678,522 + PfGW456L13_3274 0.71 -1.1
3,678,522 + PfGW456L13_3274 0.71 +0.8
3,678,523 - PfGW456L13_3274 0.71 -1.0
3,678,523 - PfGW456L13_3274 0.71 -0.4
3,678,523 - PfGW456L13_3274 0.71 -0.8
3,678,523 - PfGW456L13_3274 0.71 +0.9
3,678,523 - PfGW456L13_3274 0.71 -0.1
3,678,523 - PfGW456L13_3274 0.71 -0.1
3,678,523 - -1.5
3,678,523 - PfGW456L13_3274 0.71 -0.8
3,678,523 - +1.9
3,678,539 + PfGW456L13_3274 0.73 +0.9
3,678,539 + PfGW456L13_3274 0.73 +0.9
3,678,539 + PfGW456L13_3274 0.73 -3.7
3,678,540 - PfGW456L13_3274 0.73 -0.1
3,678,540 - PfGW456L13_3274 0.73 -0.1
3,678,540 - PfGW456L13_3274 0.73 -0.4
3,678,540 - PfGW456L13_3274 0.73 -0.1
3,678,540 - PfGW456L13_3274 0.73 -1.6
3,678,557 - PfGW456L13_3274 0.75 +0.1
3,678,798 + -0.6
3,678,799 - -0.1
3,678,850 + PfGW456L13_3275 0.11 +0.1
3,678,850 + PfGW456L13_3275 0.11 +0.1
3,678,850 + PfGW456L13_3275 0.11 -0.5
3,678,850 + PfGW456L13_3275 0.11 -0.3
3,678,850 + PfGW456L13_3275 0.11 -0.3
3,678,851 - PfGW456L13_3275 0.11 -0.1
3,678,851 - PfGW456L13_3275 0.11 -0.0
3,678,999 + +0.9
3,679,056 + PfGW456L13_3275 0.47 -0.5
3,679,063 + PfGW456L13_3275 0.49 -0.2
3,679,204 - PfGW456L13_3275 0.74 -2.3
3,679,204 - PfGW456L13_3275 0.74 -0.8
3,679,252 + PfGW456L13_3275 0.82 -0.2
3,679,416 - +0.5
3,679,444 - PfGW456L13_3276 0.10 -0.5
3,679,741 + PfGW456L13_3276 0.40 -0.8
3,679,741 + PfGW456L13_3276 0.40 +0.2
3,679,742 - PfGW456L13_3276 0.40 -0.1
3,679,742 - PfGW456L13_3276 0.40 +0.4
3,679,742 - PfGW456L13_3276 0.40 +0.3
3,679,828 - PfGW456L13_3276 0.49 -0.4
3,680,159 + PfGW456L13_3276 0.82 -0.7
3,680,159 + PfGW456L13_3276 0.82 -0.4
3,680,160 - PfGW456L13_3276 0.83 -1.1
3,680,270 + +0.7
3,680,533 + PfGW456L13_3277 0.13 -0.5
3,680,533 + PfGW456L13_3277 0.13 -0.1
3,680,533 + PfGW456L13_3277 0.13 -0.1
3,680,534 - PfGW456L13_3277 0.13 +0.3
3,680,534 - PfGW456L13_3277 0.13 -0.4
3,680,534 - PfGW456L13_3277 0.13 -0.5
3,680,534 - PfGW456L13_3277 0.13 -0.3
3,680,534 - PfGW456L13_3277 0.13 +0.7
3,680,534 - PfGW456L13_3277 0.13 -0.4
3,680,534 - PfGW456L13_3277 0.13 +0.5
3,681,305 - PfGW456L13_3277 0.61 +0.1
3,681,305 - PfGW456L13_3277 0.61 +0.1

Or see this region's nucleotide sequence