Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_2844

Experiment: Benzethonium chloride 0.0125 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_2843 and PfGW456L13_2844 are separated by 523 nucleotidesPfGW456L13_2844 and PfGW456L13_2845 are separated by 6 nucleotidesPfGW456L13_2845 and PfGW456L13_2846 are separated by 271 nucleotides PfGW456L13_2843 - Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2), at 3,151,969 to 3,153,627 _2843 PfGW456L13_2844 - Periplasmic sugar-binding domain protein, at 3,154,151 to 3,155,236 _2844 PfGW456L13_2845 - FIG00953703: hypothetical protein, at 3,155,243 to 3,155,461 _2845 PfGW456L13_2846 - hypothetical protein, at 3,155,733 to 3,162,215 _2846 Position (kb) 3154 3155 3156Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3153.383 kb on + strand, within PfGW456L13_2843at 3153.383 kb on + strand, within PfGW456L13_2843at 3153.384 kb on - strand, within PfGW456L13_2843at 3153.384 kb on - strand, within PfGW456L13_2843at 3153.472 kb on - strandat 3153.489 kb on + strandat 3153.490 kb on - strandat 3153.490 kb on - strandat 3153.490 kb on - strandat 3153.490 kb on - strandat 3153.491 kb on + strandat 3153.491 kb on + strandat 3153.491 kb on + strandat 3153.491 kb on + strandat 3153.491 kb on + strandat 3153.491 kb on + strandat 3153.491 kb on + strandat 3153.492 kb on - strandat 3153.492 kb on - strandat 3153.492 kb on - strandat 3153.492 kb on - strandat 3153.492 kb on - strandat 3153.492 kb on - strandat 3153.492 kb on - strandat 3153.551 kb on + strandat 3153.608 kb on + strandat 3153.608 kb on + strandat 3153.617 kb on + strandat 3153.617 kb on + strandat 3153.617 kb on + strandat 3153.617 kb on + strandat 3153.618 kb on - strandat 3153.618 kb on - strandat 3153.619 kb on + strandat 3153.619 kb on + strandat 3153.619 kb on + strandat 3153.619 kb on + strandat 3153.619 kb on + strandat 3153.619 kb on + strandat 3153.619 kb on + strandat 3153.619 kb on + strandat 3153.619 kb on + strandat 3153.619 kb on + strandat 3153.619 kb on + strandat 3153.620 kb on - strandat 3153.620 kb on - strandat 3153.620 kb on - strandat 3153.620 kb on - strandat 3153.620 kb on - strandat 3153.620 kb on - strandat 3153.620 kb on - strandat 3153.620 kb on - strandat 3153.623 kb on + strandat 3153.623 kb on + strandat 3153.623 kb on + strandat 3153.623 kb on + strandat 3153.623 kb on + strandat 3153.623 kb on + strandat 3153.623 kb on + strandat 3153.623 kb on + strandat 3153.623 kb on + strandat 3153.623 kb on + strandat 3153.623 kb on + strandat 3153.623 kb on + strandat 3153.623 kb on + strandat 3153.623 kb on + strandat 3153.623 kb on + strandat 3153.623 kb on + strandat 3153.623 kb on + strandat 3153.623 kb on + strandat 3153.623 kb on + strandat 3153.623 kb on + strandat 3153.624 kb on - strandat 3153.624 kb on - strandat 3153.624 kb on - strandat 3153.624 kb on - strandat 3153.624 kb on - strandat 3153.624 kb on - strandat 3153.624 kb on - strandat 3153.624 kb on - strandat 3153.624 kb on - strandat 3153.624 kb on - strandat 3153.624 kb on - strandat 3153.624 kb on - strandat 3153.624 kb on - strandat 3153.624 kb on - strandat 3153.624 kb on - strandat 3153.624 kb on - strandat 3153.624 kb on - strandat 3153.624 kb on - strandat 3153.624 kb on - strandat 3153.627 kb on + strandat 3153.627 kb on + strandat 3153.627 kb on + strandat 3153.627 kb on + strandat 3153.627 kb on + strandat 3153.627 kb on + strandat 3153.627 kb on + strandat 3153.627 kb on + strandat 3153.627 kb on + strandat 3153.627 kb on + strandat 3153.627 kb on + strandat 3153.627 kb on + strandat 3153.627 kb on + strandat 3153.627 kb on + strandat 3153.627 kb on + strandat 3153.627 kb on + strandat 3153.627 kb on + strandat 3153.627 kb on + strandat 3153.627 kb on + strandat 3153.627 kb on + strandat 3153.627 kb on + strandat 3153.627 kb on + strandat 3153.627 kb on + strandat 3153.627 kb on + strandat 3153.627 kb on + strandat 3153.627 kb on + strandat 3153.627 kb on + strandat 3153.627 kb on + strandat 3153.627 kb on + strandat 3153.627 kb on + strandat 3153.627 kb on + strandat 3153.627 kb on + strandat 3153.627 kb on + strandat 3153.627 kb on + strandat 3153.628 kb on - strandat 3153.628 kb on - strandat 3153.628 kb on - strandat 3153.628 kb on - strandat 3153.628 kb on - strandat 3153.628 kb on - strandat 3153.628 kb on - strandat 3153.628 kb on - strandat 3153.628 kb on - strandat 3153.628 kb on - strandat 3153.628 kb on - strandat 3153.628 kb on - strandat 3153.628 kb on - strandat 3153.628 kb on - strandat 3153.628 kb on - strandat 3153.628 kb on - strandat 3153.628 kb on - strandat 3153.628 kb on - strandat 3153.628 kb on - strandat 3153.628 kb on - strandat 3153.628 kb on - strandat 3153.628 kb on - strandat 3153.628 kb on - strandat 3153.628 kb on - strandat 3153.628 kb on - strandat 3153.628 kb on - strandat 3153.628 kb on - strandat 3153.628 kb on - strandat 3153.628 kb on - strandat 3153.628 kb on - strandat 3153.628 kb on - strandat 3153.628 kb on - strandat 3153.628 kb on - strandat 3153.628 kb on - strandat 3153.628 kb on - strandat 3153.628 kb on - strandat 3153.629 kb on + strandat 3153.629 kb on + strandat 3153.629 kb on + strandat 3153.629 kb on + strandat 3153.629 kb on + strandat 3153.629 kb on + strandat 3153.629 kb on + strandat 3153.629 kb on + strandat 3153.629 kb on + strandat 3153.629 kb on + strandat 3153.629 kb on + strandat 3153.629 kb on + strandat 3153.629 kb on + strandat 3153.629 kb on + strandat 3153.629 kb on + strandat 3153.629 kb on + strandat 3153.629 kb on + strandat 3153.629 kb on + strandat 3153.629 kb on + strandat 3153.629 kb on + strandat 3153.629 kb on + strandat 3153.629 kb on + strandat 3153.629 kb on + strandat 3153.630 kb on - strandat 3153.630 kb on - strandat 3153.630 kb on - strandat 3153.630 kb on - strandat 3153.630 kb on - strandat 3153.630 kb on - strandat 3153.630 kb on - strandat 3153.630 kb on - strandat 3153.630 kb on - strandat 3153.630 kb on - strandat 3153.630 kb on - strandat 3153.630 kb on - strandat 3153.630 kb on - strandat 3153.630 kb on - strandat 3153.630 kb on - strandat 3153.630 kb on - strandat 3153.630 kb on - strandat 3153.630 kb on - strandat 3153.630 kb on - strandat 3153.630 kb on - strandat 3153.630 kb on - strandat 3153.695 kb on - strandat 3153.697 kb on + strandat 3153.697 kb on + strandat 3153.697 kb on + strandat 3153.697 kb on + strandat 3153.697 kb on + strandat 3153.697 kb on + strandat 3153.697 kb on + strandat 3153.698 kb on - strandat 3153.698 kb on - strandat 3153.753 kb on - strandat 3153.795 kb on + strandat 3153.796 kb on - strandat 3153.828 kb on + strandat 3153.829 kb on - strandat 3153.867 kb on + strandat 3153.867 kb on + strandat 3153.868 kb on - strandat 3153.884 kb on + strandat 3153.885 kb on - strandat 3154.033 kb on - strandat 3154.096 kb on + strandat 3154.116 kb on - strandat 3154.116 kb on - strandat 3154.116 kb on - strandat 3154.164 kb on + strandat 3154.164 kb on + strandat 3154.164 kb on + strandat 3154.165 kb on - strandat 3154.173 kb on + strandat 3154.173 kb on + strandat 3154.174 kb on - strandat 3154.174 kb on - strandat 3154.176 kb on + strandat 3154.271 kb on + strand, within PfGW456L13_2844at 3154.401 kb on - strand, within PfGW456L13_2844at 3154.757 kb on + strand, within PfGW456L13_2844at 3154.757 kb on + strand, within PfGW456L13_2844at 3154.784 kb on + strand, within PfGW456L13_2844at 3154.785 kb on - strand, within PfGW456L13_2844at 3154.877 kb on + strand, within PfGW456L13_2844at 3154.877 kb on + strand, within PfGW456L13_2844at 3154.877 kb on + strand, within PfGW456L13_2844at 3154.877 kb on + strand, within PfGW456L13_2844at 3154.877 kb on + strand, within PfGW456L13_2844at 3154.877 kb on + strand, within PfGW456L13_2844at 3154.877 kb on + strand, within PfGW456L13_2844at 3155.300 kb on + strand, within PfGW456L13_2845at 3155.300 kb on + strand, within PfGW456L13_2845at 3155.300 kb on + strand, within PfGW456L13_2845at 3155.461 kb on + strandat 3155.461 kb on + strandat 3155.462 kb on - strandat 3155.480 kb on + strandat 3155.480 kb on + strandat 3155.480 kb on + strandat 3155.495 kb on + strandat 3155.495 kb on + strandat 3155.495 kb on + strandat 3155.495 kb on + strandat 3155.495 kb on + strandat 3155.496 kb on - strandat 3155.496 kb on - strandat 3155.573 kb on + strandat 3155.573 kb on + strandat 3155.573 kb on + strandat 3155.573 kb on + strandat 3155.573 kb on + strandat 3155.573 kb on + strandat 3155.573 kb on + strandat 3155.573 kb on + strandat 3155.573 kb on + strandat 3155.573 kb on + strandat 3155.573 kb on + strandat 3155.574 kb on - strandat 3155.574 kb on - strandat 3155.574 kb on - strandat 3155.574 kb on - strandat 3155.574 kb on - strandat 3155.574 kb on - strandat 3155.574 kb on - strandat 3155.574 kb on - strandat 3155.574 kb on - strandat 3155.577 kb on + strandat 3155.577 kb on + strandat 3155.577 kb on + strandat 3155.577 kb on + strandat 3155.577 kb on + strandat 3155.578 kb on - strandat 3155.578 kb on - strandat 3155.578 kb on - strandat 3155.586 kb on + strandat 3155.587 kb on - strandat 3155.587 kb on - strandat 3155.587 kb on - strandat 3155.707 kb on + strandat 3155.707 kb on + strandat 3155.707 kb on + strandat 3155.707 kb on + strandat 3155.708 kb on - strandat 3155.708 kb on - strandat 3155.708 kb on - strandat 3155.708 kb on - strandat 3155.708 kb on - strandat 3155.767 kb on + strandat 3155.768 kb on - strandat 3155.799 kb on + strandat 3155.799 kb on + strandat 3155.800 kb on - strandat 3156.080 kb on + strandat 3156.080 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Benzethonium chloride 0.0125 mM
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3,153,383 + PfGW456L13_2843 0.85 +0.3
3,153,383 + PfGW456L13_2843 0.85 +1.1
3,153,384 - PfGW456L13_2843 0.85 -1.1
3,153,384 - PfGW456L13_2843 0.85 +0.2
3,153,472 - -0.4
3,153,489 + -0.8
3,153,490 - -0.2
3,153,490 - -0.4
3,153,490 - -0.9
3,153,490 - +1.4
3,153,491 + +0.5
3,153,491 + -1.4
3,153,491 + +0.2
3,153,491 + -0.2
3,153,491 + -0.6
3,153,491 + -3.5
3,153,491 + +0.3
3,153,492 - -0.1
3,153,492 - +0.5
3,153,492 - -0.0
3,153,492 - +0.0
3,153,492 - -1.4
3,153,492 - -1.3
3,153,492 - +1.3
3,153,551 + -1.0
3,153,608 + -1.1
3,153,608 + +1.1
3,153,617 + -0.6
3,153,617 + -0.7
3,153,617 + -0.5
3,153,617 + -0.2
3,153,618 - -0.3
3,153,618 - +1.0
3,153,619 + +0.6
3,153,619 + +1.2
3,153,619 + +0.3
3,153,619 + -1.7
3,153,619 + -0.5
3,153,619 + -0.0
3,153,619 + -0.6
3,153,619 + -0.3
3,153,619 + +0.5
3,153,619 + -0.4
3,153,619 + -1.3
3,153,620 - +1.0
3,153,620 - +0.4
3,153,620 - -0.6
3,153,620 - -1.1
3,153,620 - +1.0
3,153,620 - -0.8
3,153,620 - +0.3
3,153,620 - -0.9
3,153,623 + +0.0
3,153,623 + +0.1
3,153,623 + -0.6
3,153,623 + +0.3
3,153,623 + +0.2
3,153,623 + +0.0
3,153,623 + -0.8
3,153,623 + +0.5
3,153,623 + -1.9
3,153,623 + -0.3
3,153,623 + +1.4
3,153,623 + -2.0
3,153,623 + -0.6
3,153,623 + -0.4
3,153,623 + -1.4
3,153,623 + +0.2
3,153,623 + +0.2
3,153,623 + -0.1
3,153,623 + -0.2
3,153,623 + -0.4
3,153,624 - -0.8
3,153,624 - +0.9
3,153,624 - -1.2
3,153,624 - +0.2
3,153,624 - -0.8
3,153,624 - -0.0
3,153,624 - +0.7
3,153,624 - +0.8
3,153,624 - +0.6
3,153,624 - +0.7
3,153,624 - +0.2
3,153,624 - +0.3
3,153,624 - -0.1
3,153,624 - -1.4
3,153,624 - +0.7
3,153,624 - -1.4
3,153,624 - -0.1
3,153,624 - -0.3
3,153,624 - +0.7
3,153,627 + -0.4
3,153,627 + -0.6
3,153,627 + -0.9
3,153,627 + +0.4
3,153,627 + -0.4
3,153,627 + -0.2
3,153,627 + -0.6
3,153,627 + -1.1
3,153,627 + +0.1
3,153,627 + -0.1
3,153,627 + -0.2
3,153,627 + -0.9
3,153,627 + -1.3
3,153,627 + -0.2
3,153,627 + +0.4
3,153,627 + -0.1
3,153,627 + -0.8
3,153,627 + -0.8
3,153,627 + -0.1
3,153,627 + -0.7
3,153,627 + -0.9
3,153,627 + -0.6
3,153,627 + -0.7
3,153,627 + +0.1
3,153,627 + +0.1
3,153,627 + +0.3
3,153,627 + +0.3
3,153,627 + -0.7
3,153,627 + -0.4
3,153,627 + -0.5
3,153,627 + -0.3
3,153,627 + -0.4
3,153,627 + -0.6
3,153,627 + -1.2
3,153,628 - -0.7
3,153,628 - +1.9
3,153,628 - -0.3
3,153,628 - -1.1
3,153,628 - -1.0
3,153,628 - -1.9
3,153,628 - -0.6
3,153,628 - -0.0
3,153,628 - +0.4
3,153,628 - -0.7
3,153,628 - -1.2
3,153,628 - +1.1
3,153,628 - -0.0
3,153,628 - +0.2
3,153,628 - -0.2
3,153,628 - -0.0
3,153,628 - -1.4
3,153,628 - +2.0
3,153,628 - +1.8
3,153,628 - +0.5
3,153,628 - +0.9
3,153,628 - -2.7
3,153,628 - -0.5
3,153,628 - +1.8
3,153,628 - +0.9
3,153,628 - +0.5
3,153,628 - +1.3
3,153,628 - +0.0
3,153,628 - +0.3
3,153,628 - +1.1
3,153,628 - -0.9
3,153,628 - +0.1
3,153,628 - +0.3
3,153,628 - -0.9
3,153,628 - -0.5
3,153,628 - -1.2
3,153,629 + -0.8
3,153,629 + -0.7
3,153,629 + +0.3
3,153,629 + +0.3
3,153,629 + -0.6
3,153,629 + +0.6
3,153,629 + +0.1
3,153,629 + -0.4
3,153,629 + +0.1
3,153,629 + +0.1
3,153,629 + -0.6
3,153,629 + -0.5
3,153,629 + -0.4
3,153,629 + +0.6
3,153,629 + -0.1
3,153,629 + +0.2
3,153,629 + -1.0
3,153,629 + -1.3
3,153,629 + -0.7
3,153,629 + -0.7
3,153,629 + -0.4
3,153,629 + -0.1
3,153,629 + -1.7
3,153,630 - -0.8
3,153,630 - +2.9
3,153,630 - -0.8
3,153,630 - +0.7
3,153,630 - -0.6
3,153,630 - -0.2
3,153,630 - -0.1
3,153,630 - -0.5
3,153,630 - -0.4
3,153,630 - -1.4
3,153,630 - -1.2
3,153,630 - -0.8
3,153,630 - -1.1
3,153,630 - +0.3
3,153,630 - -0.5
3,153,630 - -0.2
3,153,630 - -1.0
3,153,630 - -0.4
3,153,630 - -1.4
3,153,630 - -0.7
3,153,630 - -0.3
3,153,695 - -0.9
3,153,697 + -1.8
3,153,697 + -1.4
3,153,697 + +0.3
3,153,697 + +0.3
3,153,697 + -0.2
3,153,697 + -1.4
3,153,697 + -0.1
3,153,698 - +0.5
3,153,698 - +0.9
3,153,753 - -0.7
3,153,795 + -0.3
3,153,796 - -0.6
3,153,828 + +1.3
3,153,829 - -0.6
3,153,867 + +0.4
3,153,867 + -0.1
3,153,868 - +0.0
3,153,884 + +0.4
3,153,885 - +0.5
3,154,033 - +1.0
3,154,096 + +1.2
3,154,116 - +0.4
3,154,116 - -0.7
3,154,116 - +0.8
3,154,164 + +0.8
3,154,164 + +1.9
3,154,164 + +0.6
3,154,165 - +0.7
3,154,173 + +0.3
3,154,173 + +0.7
3,154,174 - +0.6
3,154,174 - +0.0
3,154,176 + +0.9
3,154,271 + PfGW456L13_2844 0.11 +0.3
3,154,401 - PfGW456L13_2844 0.23 +0.3
3,154,757 + PfGW456L13_2844 0.56 -0.2
3,154,757 + PfGW456L13_2844 0.56 +0.9
3,154,784 + PfGW456L13_2844 0.58 +0.3
3,154,785 - PfGW456L13_2844 0.58 -0.1
3,154,877 + PfGW456L13_2844 0.67 +0.6
3,154,877 + PfGW456L13_2844 0.67 +0.5
3,154,877 + PfGW456L13_2844 0.67 -1.1
3,154,877 + PfGW456L13_2844 0.67 +1.7
3,154,877 + PfGW456L13_2844 0.67 -1.3
3,154,877 + PfGW456L13_2844 0.67 -0.6
3,154,877 + PfGW456L13_2844 0.67 -1.2
3,155,300 + PfGW456L13_2845 0.26 -0.2
3,155,300 + PfGW456L13_2845 0.26 -2.8
3,155,300 + PfGW456L13_2845 0.26 -2.1
3,155,461 + +0.3
3,155,461 + -0.1
3,155,462 - -0.6
3,155,480 + -0.7
3,155,480 + -0.6
3,155,480 + -0.2
3,155,495 + -0.4
3,155,495 + -0.2
3,155,495 + -1.0
3,155,495 + -0.1
3,155,495 + -0.4
3,155,496 - +1.7
3,155,496 - +0.7
3,155,573 + -0.1
3,155,573 + -0.1
3,155,573 + +0.3
3,155,573 + +0.6
3,155,573 + +0.1
3,155,573 + +0.6
3,155,573 + +0.2
3,155,573 + +0.4
3,155,573 + -1.4
3,155,573 + -0.9
3,155,573 + +0.1
3,155,574 - -0.5
3,155,574 - +0.1
3,155,574 - +0.2
3,155,574 - -0.8
3,155,574 - +0.1
3,155,574 - -2.1
3,155,574 - -0.6
3,155,574 - -0.7
3,155,574 - -0.2
3,155,577 + -1.1
3,155,577 + -1.4
3,155,577 + +1.4
3,155,577 + -0.8
3,155,577 + -0.4
3,155,578 - +1.4
3,155,578 - -1.2
3,155,578 - -0.5
3,155,586 + +0.2
3,155,587 - +0.7
3,155,587 - +0.3
3,155,587 - -0.1
3,155,707 + +0.2
3,155,707 + +0.5
3,155,707 + -0.1
3,155,707 + -1.0
3,155,708 - -0.7
3,155,708 - -0.3
3,155,708 - -1.1
3,155,708 - -1.4
3,155,708 - +0.4
3,155,767 + +0.2
3,155,768 - +0.9
3,155,799 + -1.9
3,155,799 + -0.3
3,155,800 - +0.3
3,156,080 + -0.1
3,156,080 + -2.0

Or see this region's nucleotide sequence