Experiment: Beta-Lactose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0535 and Echvi_0536 are separated by 234 nucleotides Echvi_0536 and Echvi_0537 are separated by 77 nucleotides Echvi_0537 and Echvi_0538 are separated by 116 nucleotides
Echvi_0535: Echvi_0535 - NAD-dependent aldehyde dehydrogenases, at 597,007 to 598,551
_0535
Echvi_0536: Echvi_0536 - hypothetical protein, at 598,786 to 599,355
_0536
Echvi_0537: Echvi_0537 - hypothetical protein, at 599,433 to 600,113
_0537
Echvi_0538: Echvi_0538 - hypothetical protein, at 600,230 to 601,024
_0538
Position (kb) 598
599
600 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 597.843 kb on + strand, within Echvi_0535 at 597.921 kb on + strand, within Echvi_0535 at 597.922 kb on - strand, within Echvi_0535 at 597.925 kb on - strand, within Echvi_0535 at 597.925 kb on - strand, within Echvi_0535 at 597.943 kb on + strand, within Echvi_0535 at 598.075 kb on + strand, within Echvi_0535 at 598.075 kb on + strand, within Echvi_0535 at 598.103 kb on + strand, within Echvi_0535 at 598.103 kb on + strand, within Echvi_0535 at 598.103 kb on + strand, within Echvi_0535 at 598.104 kb on - strand, within Echvi_0535 at 598.104 kb on - strand, within Echvi_0535 at 598.107 kb on + strand, within Echvi_0535 at 598.107 kb on + strand, within Echvi_0535 at 598.107 kb on + strand, within Echvi_0535 at 598.107 kb on + strand, within Echvi_0535 at 598.108 kb on - strand, within Echvi_0535 at 598.108 kb on - strand, within Echvi_0535 at 598.134 kb on + strand, within Echvi_0535 at 598.137 kb on + strand, within Echvi_0535 at 598.137 kb on + strand, within Echvi_0535 at 598.138 kb on - strand, within Echvi_0535 at 598.138 kb on - strand, within Echvi_0535 at 598.138 kb on - strand, within Echvi_0535 at 598.138 kb on - strand, within Echvi_0535 at 598.183 kb on - strand, within Echvi_0535 at 598.183 kb on - strand, within Echvi_0535 at 598.238 kb on + strand, within Echvi_0535 at 598.247 kb on - strand, within Echvi_0535 at 598.247 kb on - strand, within Echvi_0535 at 598.300 kb on + strand, within Echvi_0535 at 598.300 kb on + strand, within Echvi_0535 at 598.434 kb on - strand at 598.441 kb on - strand at 598.459 kb on - strand at 598.462 kb on + strand at 598.463 kb on - strand at 598.463 kb on - strand at 598.464 kb on + strand at 598.491 kb on + strand at 598.495 kb on + strand at 598.496 kb on - strand at 598.570 kb on - strand at 598.587 kb on - strand at 598.619 kb on - strand at 598.622 kb on + strand at 598.623 kb on - strand at 598.639 kb on + strand at 598.653 kb on + strand at 598.653 kb on + strand at 598.653 kb on + strand at 598.657 kb on + strand at 598.657 kb on + strand at 598.658 kb on - strand at 598.751 kb on + strand at 598.751 kb on + strand at 598.752 kb on - strand at 598.752 kb on - strand at 598.753 kb on + strand at 598.754 kb on - strand at 598.754 kb on - strand at 598.754 kb on - strand at 598.754 kb on - strand at 598.758 kb on + strand at 598.758 kb on + strand at 598.759 kb on - strand at 598.761 kb on - strand at 598.764 kb on + strand at 598.765 kb on - strand at 598.765 kb on - strand at 598.765 kb on - strand at 598.796 kb on - strand at 598.823 kb on + strand at 598.827 kb on + strand at 598.827 kb on + strand at 598.828 kb on - strand at 598.828 kb on - strand at 598.828 kb on - strand at 598.828 kb on - strand at 598.884 kb on + strand, within Echvi_0536 at 598.884 kb on + strand, within Echvi_0536 at 598.885 kb on - strand, within Echvi_0536 at 598.972 kb on - strand, within Echvi_0536 at 599.017 kb on - strand, within Echvi_0536 at 599.151 kb on + strand, within Echvi_0536 at 599.151 kb on + strand, within Echvi_0536 at 599.160 kb on + strand, within Echvi_0536 at 599.160 kb on + strand, within Echvi_0536 at 599.161 kb on - strand, within Echvi_0536 at 599.195 kb on + strand, within Echvi_0536 at 599.196 kb on - strand, within Echvi_0536 at 599.202 kb on + strand, within Echvi_0536 at 599.202 kb on + strand, within Echvi_0536 at 599.202 kb on + strand, within Echvi_0536 at 599.206 kb on + strand, within Echvi_0536 at 599.312 kb on + strand at 599.442 kb on + strand at 599.442 kb on + strand at 599.443 kb on - strand at 599.450 kb on - strand at 599.452 kb on + strand at 599.452 kb on + strand at 599.452 kb on + strand at 599.452 kb on + strand at 599.453 kb on - strand at 599.453 kb on - strand at 599.526 kb on + strand, within Echvi_0537 at 599.548 kb on - strand, within Echvi_0537 at 599.548 kb on - strand, within Echvi_0537 at 599.549 kb on + strand, within Echvi_0537 at 599.549 kb on + strand, within Echvi_0537 at 599.550 kb on - strand, within Echvi_0537 at 599.555 kb on + strand, within Echvi_0537 at 599.556 kb on - strand, within Echvi_0537 at 599.606 kb on + strand, within Echvi_0537 at 599.631 kb on + strand at 599.631 kb on + strand, within Echvi_0537 at 599.631 kb on + strand, within Echvi_0537 at 599.632 kb on - strand, within Echvi_0537 at 599.698 kb on + strand, within Echvi_0537 at 599.698 kb on + strand, within Echvi_0537 at 599.699 kb on - strand, within Echvi_0537 at 599.699 kb on - strand, within Echvi_0537 at 599.699 kb on - strand, within Echvi_0537 at 599.727 kb on + strand, within Echvi_0537 at 599.728 kb on - strand, within Echvi_0537 at 599.739 kb on + strand, within Echvi_0537 at 599.739 kb on + strand, within Echvi_0537 at 599.739 kb on + strand, within Echvi_0537 at 599.740 kb on - strand, within Echvi_0537 at 599.740 kb on - strand, within Echvi_0537 at 599.740 kb on - strand, within Echvi_0537 at 599.751 kb on - strand, within Echvi_0537 at 599.751 kb on - strand, within Echvi_0537 at 599.751 kb on - strand, within Echvi_0537 at 599.787 kb on + strand, within Echvi_0537 at 599.788 kb on - strand, within Echvi_0537 at 599.889 kb on - strand, within Echvi_0537 at 599.889 kb on - strand, within Echvi_0537 at 599.892 kb on + strand, within Echvi_0537 at 599.892 kb on + strand, within Echvi_0537 at 599.958 kb on - strand, within Echvi_0537 at 599.978 kb on - strand, within Echvi_0537 at 599.978 kb on - strand, within Echvi_0537 at 599.978 kb on - strand, within Echvi_0537 at 599.985 kb on - strand, within Echvi_0537 at 599.987 kb on + strand, within Echvi_0537 at 600.032 kb on + strand, within Echvi_0537 at 600.032 kb on + strand, within Echvi_0537 at 600.032 kb on + strand, within Echvi_0537 at 600.032 kb on + strand, within Echvi_0537 at 600.033 kb on - strand, within Echvi_0537 at 600.033 kb on - strand, within Echvi_0537 at 600.033 kb on - strand, within Echvi_0537 at 600.075 kb on - strand at 600.135 kb on - strand at 600.135 kb on - strand at 600.135 kb on - strand at 600.135 kb on - strand at 600.136 kb on + strand at 600.136 kb on + strand at 600.136 kb on + strand at 600.136 kb on + strand at 600.137 kb on - strand at 600.137 kb on - strand at 600.137 kb on - strand at 600.156 kb on - strand at 600.156 kb on - strand at 600.164 kb on - strand at 600.164 kb on - strand at 600.180 kb on + strand at 600.181 kb on - strand at 600.183 kb on - strand at 600.183 kb on - strand at 600.183 kb on - strand at 600.183 kb on - strand at 600.191 kb on + strand at 600.221 kb on - strand at 600.227 kb on + strand at 600.334 kb on + strand at 600.335 kb on - strand, within Echvi_0538 at 600.335 kb on - strand, within Echvi_0538 at 600.339 kb on - strand, within Echvi_0538 at 600.339 kb on - strand, within Echvi_0538 at 600.339 kb on - strand, within Echvi_0538
Per-strain Table
Position Strand Gene LocusTag Fraction Beta-Lactose (C) remove 597,843 + Echvi_0535 0.54 -0.3 597,921 + Echvi_0535 0.59 +0.4 597,922 - Echvi_0535 0.59 +0.1 597,925 - Echvi_0535 0.59 -0.5 597,925 - Echvi_0535 0.59 -0.3 597,943 + Echvi_0535 0.61 -1.5 598,075 + Echvi_0535 0.69 +0.7 598,075 + Echvi_0535 0.69 +0.7 598,103 + Echvi_0535 0.71 -0.2 598,103 + Echvi_0535 0.71 -0.1 598,103 + Echvi_0535 0.71 -2.0 598,104 - Echvi_0535 0.71 -1.1 598,104 - Echvi_0535 0.71 -0.9 598,107 + Echvi_0535 0.71 +0.2 598,107 + Echvi_0535 0.71 +0.3 598,107 + Echvi_0535 0.71 -0.3 598,107 + Echvi_0535 0.71 +0.4 598,108 - Echvi_0535 0.71 -0.6 598,108 - Echvi_0535 0.71 +1.4 598,134 + Echvi_0535 0.73 -0.7 598,137 + Echvi_0535 0.73 -1.5 598,137 + Echvi_0535 0.73 -0.6 598,138 - Echvi_0535 0.73 -0.4 598,138 - Echvi_0535 0.73 -0.5 598,138 - Echvi_0535 0.73 +0.4 598,138 - Echvi_0535 0.73 +0.3 598,183 - Echvi_0535 0.76 +0.3 598,183 - Echvi_0535 0.76 -0.7 598,238 + Echvi_0535 0.80 +0.8 598,247 - Echvi_0535 0.80 +0.3 598,247 - Echvi_0535 0.80 +2.4 598,300 + Echvi_0535 0.84 -0.4 598,300 + Echvi_0535 0.84 +0.3 598,434 - +0.9 598,441 - -0.2 598,459 - -0.7 598,462 + -0.4 598,463 - +1.6 598,463 - -0.4 598,464 + -1.1 598,491 + +1.0 598,495 + +0.2 598,496 - +0.4 598,570 - -0.7 598,587 - +0.9 598,619 - +0.9 598,622 + -0.5 598,623 - -0.5 598,639 + +0.3 598,653 + +0.9 598,653 + -0.7 598,653 + -0.5 598,657 + -0.4 598,657 + +1.3 598,658 - +0.0 598,751 + -0.7 598,751 + -0.2 598,752 - -0.7 598,752 - +0.2 598,753 + +0.6 598,754 - +0.1 598,754 - -1.0 598,754 - -0.7 598,754 - +0.3 598,758 + -0.1 598,758 + -1.8 598,759 - +0.3 598,761 - -0.5 598,764 + -0.2 598,765 - -0.7 598,765 - -1.4 598,765 - +0.5 598,796 - +0.2 598,823 + +0.4 598,827 + +0.4 598,827 + -0.4 598,828 - -0.1 598,828 - +0.2 598,828 - -0.5 598,828 - -0.3 598,884 + Echvi_0536 0.17 -0.3 598,884 + Echvi_0536 0.17 +0.0 598,885 - Echvi_0536 0.17 -0.3 598,972 - Echvi_0536 0.33 -0.1 599,017 - Echvi_0536 0.41 +0.0 599,151 + Echvi_0536 0.64 -0.5 599,151 + Echvi_0536 0.64 -2.0 599,160 + Echvi_0536 0.66 +0.5 599,160 + Echvi_0536 0.66 +1.4 599,161 - Echvi_0536 0.66 +0.0 599,195 + Echvi_0536 0.72 -0.1 599,196 - Echvi_0536 0.72 -0.6 599,202 + Echvi_0536 0.73 -1.5 599,202 + Echvi_0536 0.73 +0.2 599,202 + Echvi_0536 0.73 +0.1 599,206 + Echvi_0536 0.74 -0.8 599,312 + +0.1 599,442 + -0.7 599,442 + +0.7 599,443 - +1.0 599,450 - -0.1 599,452 + +1.0 599,452 + -1.8 599,452 + -0.9 599,452 + +0.3 599,453 - +0.5 599,453 - -0.6 599,526 + Echvi_0537 0.14 +0.4 599,548 - Echvi_0537 0.17 -1.0 599,548 - Echvi_0537 0.17 -0.1 599,549 + Echvi_0537 0.17 -0.5 599,549 + Echvi_0537 0.17 +1.3 599,550 - Echvi_0537 0.17 +0.3 599,555 + Echvi_0537 0.18 +0.5 599,556 - Echvi_0537 0.18 -0.5 599,606 + Echvi_0537 0.25 +0.0 599,631 + +0.9 599,631 + Echvi_0537 0.29 +0.2 599,631 + Echvi_0537 0.29 +1.3 599,632 - Echvi_0537 0.29 -0.3 599,698 + Echvi_0537 0.39 +0.5 599,698 + Echvi_0537 0.39 +0.4 599,699 - Echvi_0537 0.39 -0.1 599,699 - Echvi_0537 0.39 +0.5 599,699 - Echvi_0537 0.39 -1.0 599,727 + Echvi_0537 0.43 +2.2 599,728 - Echvi_0537 0.43 -1.3 599,739 + Echvi_0537 0.45 -1.4 599,739 + Echvi_0537 0.45 -1.8 599,739 + Echvi_0537 0.45 +0.5 599,740 - Echvi_0537 0.45 -0.4 599,740 - Echvi_0537 0.45 -0.7 599,740 - Echvi_0537 0.45 -0.4 599,751 - Echvi_0537 0.47 -1.1 599,751 - Echvi_0537 0.47 +0.1 599,751 - Echvi_0537 0.47 -0.6 599,787 + Echvi_0537 0.52 -0.4 599,788 - Echvi_0537 0.52 -1.1 599,889 - Echvi_0537 0.67 -0.5 599,889 - Echvi_0537 0.67 +0.9 599,892 + Echvi_0537 0.67 +1.6 599,892 + Echvi_0537 0.67 -0.7 599,958 - Echvi_0537 0.77 +0.3 599,978 - Echvi_0537 0.80 -0.4 599,978 - Echvi_0537 0.80 +0.2 599,978 - Echvi_0537 0.80 -0.3 599,985 - Echvi_0537 0.81 +0.9 599,987 + Echvi_0537 0.81 +0.9 600,032 + Echvi_0537 0.88 +1.4 600,032 + Echvi_0537 0.88 -0.2 600,032 + Echvi_0537 0.88 +0.3 600,032 + Echvi_0537 0.88 -0.6 600,033 - Echvi_0537 0.88 -1.2 600,033 - Echvi_0537 0.88 +1.3 600,033 - Echvi_0537 0.88 -0.9 600,075 - +0.3 600,135 - +0.9 600,135 - -0.4 600,135 - +0.8 600,135 - -0.1 600,136 + +0.4 600,136 + +1.5 600,136 + +1.3 600,136 + -0.9 600,137 - +0.4 600,137 - -0.4 600,137 - +2.6 600,156 - +0.7 600,156 - +1.1 600,164 - -0.6 600,164 - -1.0 600,180 + +2.0 600,181 - -1.4 600,183 - -0.7 600,183 - +0.9 600,183 - -0.1 600,183 - -0.3 600,191 + -0.1 600,221 - -0.9 600,227 + -0.8 600,334 + +3.4 600,335 - Echvi_0538 0.13 -0.8 600,335 - Echvi_0538 0.13 +0.5 600,339 - Echvi_0538 0.14 -1.3 600,339 - Echvi_0538 0.14 -1.6 600,339 - Echvi_0538 0.14 -0.3
Or see this region's nucleotide sequence