Strain Fitness in Agrobacterium fabrum C58 around Atu6062

Experiment: Dextrin from potato starch (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu6061 and Atu6062 are separated by 157 nucleotidesAtu6062 and Atu6063 are separated by 159 nucleotides Atu6061: Atu6061 - nitrilotriacetate monooxygenase, at 72,521 to 73,768 Atu6061 Atu6062: Atu6062 - 2-deoxy-D-gluconate 3-dehydrogenase, at 73,926 to 74,696 Atu6062 Atu6063: Atu6063 - oxidoreductase, GMC family, at 74,856 to 76,481 Atu6063 Position (kb) 73 74 75Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 72.954 kb on - strand, within Atu6061at 72.960 kb on + strand, within Atu6061at 72.976 kb on + strand, within Atu6061at 72.981 kb on + strand, within Atu6061at 72.981 kb on + strand, within Atu6061at 72.986 kb on + strand, within Atu6061at 72.986 kb on + strand, within Atu6061at 72.989 kb on - strand, within Atu6061at 72.989 kb on - strand, within Atu6061at 72.989 kb on - strand, within Atu6061at 72.994 kb on - strand, within Atu6061at 73.029 kb on + strand, within Atu6061at 73.029 kb on + strand, within Atu6061at 73.052 kb on + strand, within Atu6061at 73.052 kb on + strand, within Atu6061at 73.052 kb on + strand, within Atu6061at 73.052 kb on + strand, within Atu6061at 73.060 kb on - strand, within Atu6061at 73.060 kb on - strand, within Atu6061at 73.067 kb on + strand, within Atu6061at 73.078 kb on + strand, within Atu6061at 73.114 kb on + strand, within Atu6061at 73.132 kb on + strand, within Atu6061at 73.168 kb on + strand, within Atu6061at 73.227 kb on + strand, within Atu6061at 73.227 kb on + strand, within Atu6061at 73.235 kb on - strand, within Atu6061at 73.235 kb on - strand, within Atu6061at 73.235 kb on - strand, within Atu6061at 73.257 kb on + strand, within Atu6061at 73.265 kb on - strand, within Atu6061at 73.322 kb on + strand, within Atu6061at 73.328 kb on - strand, within Atu6061at 73.330 kb on - strand, within Atu6061at 73.347 kb on + strand, within Atu6061at 73.411 kb on + strand, within Atu6061at 73.477 kb on - strand, within Atu6061at 73.497 kb on - strand, within Atu6061at 73.593 kb on + strand, within Atu6061at 73.601 kb on - strand, within Atu6061at 73.601 kb on - strand, within Atu6061at 73.601 kb on - strand, within Atu6061at 73.642 kb on + strand, within Atu6061at 73.653 kb on + strandat 73.665 kb on - strandat 73.700 kb on - strandat 73.706 kb on - strandat 73.706 kb on - strandat 73.716 kb on + strandat 73.721 kb on + strandat 73.724 kb on - strandat 73.755 kb on - strandat 73.755 kb on - strandat 73.755 kb on - strandat 73.779 kb on + strandat 73.787 kb on - strandat 73.792 kb on - strandat 73.827 kb on + strandat 73.898 kb on - strandat 73.918 kb on + strandat 73.936 kb on - strandat 73.962 kb on - strandat 73.963 kb on + strandat 73.963 kb on + strandat 74.084 kb on - strand, within Atu6062at 74.086 kb on + strand, within Atu6062at 74.094 kb on - strand, within Atu6062at 74.094 kb on - strand, within Atu6062at 74.094 kb on - strand, within Atu6062at 74.101 kb on - strand, within Atu6062at 74.122 kb on + strand, within Atu6062at 74.269 kb on + strand, within Atu6062at 74.311 kb on + strand, within Atu6062at 74.323 kb on + strand, within Atu6062at 74.438 kb on + strand, within Atu6062at 74.439 kb on + strand, within Atu6062at 74.439 kb on + strand, within Atu6062at 74.444 kb on + strand, within Atu6062at 74.466 kb on - strand, within Atu6062at 74.539 kb on + strand, within Atu6062at 74.547 kb on - strand, within Atu6062at 74.547 kb on - strand, within Atu6062at 74.547 kb on - strand, within Atu6062at 74.567 kb on + strand, within Atu6062at 74.656 kb on + strandat 74.724 kb on + strandat 74.779 kb on + strandat 74.787 kb on - strandat 74.787 kb on - strandat 74.787 kb on - strandat 74.792 kb on - strandat 74.844 kb on - strandat 74.892 kb on - strandat 74.974 kb on - strandat 74.974 kb on - strandat 74.974 kb on - strandat 74.985 kb on - strandat 75.056 kb on + strand, within Atu6063at 75.064 kb on - strand, within Atu6063at 75.076 kb on - strand, within Atu6063at 75.112 kb on + strand, within Atu6063at 75.118 kb on + strand, within Atu6063at 75.120 kb on - strand, within Atu6063at 75.162 kb on - strand, within Atu6063at 75.175 kb on + strand, within Atu6063at 75.175 kb on + strand, within Atu6063at 75.182 kb on + strand, within Atu6063at 75.182 kb on + strand, within Atu6063at 75.190 kb on - strand, within Atu6063at 75.190 kb on - strand, within Atu6063at 75.192 kb on + strand, within Atu6063at 75.200 kb on - strand, within Atu6063at 75.200 kb on - strand, within Atu6063at 75.200 kb on - strand, within Atu6063at 75.200 kb on - strand, within Atu6063at 75.202 kb on + strand, within Atu6063at 75.285 kb on - strand, within Atu6063at 75.287 kb on + strand, within Atu6063at 75.295 kb on - strand, within Atu6063at 75.300 kb on - strand, within Atu6063at 75.314 kb on - strand, within Atu6063at 75.351 kb on - strand, within Atu6063at 75.417 kb on - strand, within Atu6063at 75.418 kb on + strand, within Atu6063at 75.423 kb on - strand, within Atu6063at 75.429 kb on + strand, within Atu6063at 75.465 kb on + strand, within Atu6063at 75.490 kb on + strand, within Atu6063at 75.490 kb on + strand, within Atu6063at 75.490 kb on + strand, within Atu6063at 75.495 kb on + strand, within Atu6063at 75.498 kb on - strand, within Atu6063at 75.527 kb on - strand, within Atu6063at 75.559 kb on + strand, within Atu6063at 75.559 kb on + strand, within Atu6063at 75.567 kb on - strand, within Atu6063at 75.577 kb on - strand, within Atu6063at 75.584 kb on - strand, within Atu6063at 75.590 kb on - strand, within Atu6063at 75.623 kb on - strand, within Atu6063at 75.623 kb on - strand, within Atu6063at 75.648 kb on - strand, within Atu6063at 75.657 kb on - strand, within Atu6063at 75.676 kb on - strand, within Atu6063at 75.689 kb on - strand, within Atu6063

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Per-strain Table

Position Strand Gene LocusTag Fraction Dextrin from potato starch (C)
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72,954 - Atu6061 0.35 -0.0
72,960 + Atu6061 0.35 -0.4
72,976 + Atu6061 0.36 +3.2
72,981 + Atu6061 0.37 +0.1
72,981 + Atu6061 0.37 +1.0
72,986 + Atu6061 0.37 +2.6
72,986 + Atu6061 0.37 -0.9
72,989 - Atu6061 0.38 +0.2
72,989 - Atu6061 0.38 -0.4
72,989 - Atu6061 0.38 +3.2
72,994 - Atu6061 0.38 +1.4
73,029 + Atu6061 0.41 +0.4
73,029 + Atu6061 0.41 +0.4
73,052 + Atu6061 0.43 -0.5
73,052 + Atu6061 0.43 +2.2
73,052 + Atu6061 0.43 +2.2
73,052 + Atu6061 0.43 +0.4
73,060 - Atu6061 0.43 +1.2
73,060 - Atu6061 0.43 +0.2
73,067 + Atu6061 0.44 +0.6
73,078 + Atu6061 0.45 +3.2
73,114 + Atu6061 0.48 +2.6
73,132 + Atu6061 0.49 +0.3
73,168 + Atu6061 0.52 -0.9
73,227 + Atu6061 0.57 -0.8
73,227 + Atu6061 0.57 +0.1
73,235 - Atu6061 0.57 +0.5
73,235 - Atu6061 0.57 +1.6
73,235 - Atu6061 0.57 -0.2
73,257 + Atu6061 0.59 +0.4
73,265 - Atu6061 0.60 -0.1
73,322 + Atu6061 0.64 +1.2
73,328 - Atu6061 0.65 -0.6
73,330 - Atu6061 0.65 -1.0
73,347 + Atu6061 0.66 +0.3
73,411 + Atu6061 0.71 +0.1
73,477 - Atu6061 0.77 +3.2
73,497 - Atu6061 0.78 +0.0
73,593 + Atu6061 0.86 +0.3
73,601 - Atu6061 0.87 +2.2
73,601 - Atu6061 0.87 +0.6
73,601 - Atu6061 0.87 -0.9
73,642 + Atu6061 0.90 +0.9
73,653 + +2.6
73,665 - +2.6
73,700 - +2.3
73,706 - +2.2
73,706 - +2.2
73,716 + +1.4
73,721 + +1.4
73,724 - -0.5
73,755 - +3.2
73,755 - +3.8
73,755 - -0.1
73,779 + +1.9
73,787 - +0.3
73,792 - -0.6
73,827 + +1.5
73,898 - -0.3
73,918 + +1.2
73,936 - +3.6
73,962 - +0.8
73,963 + -0.7
73,963 + +2.6
74,084 - Atu6062 0.20 +1.2
74,086 + Atu6062 0.21 +2.7
74,094 - Atu6062 0.22 +1.4
74,094 - Atu6062 0.22 +0.9
74,094 - Atu6062 0.22 -0.4
74,101 - Atu6062 0.23 +0.7
74,122 + Atu6062 0.25 -0.1
74,269 + Atu6062 0.44 +0.5
74,311 + Atu6062 0.50 +0.6
74,323 + Atu6062 0.51 -1.2
74,438 + Atu6062 0.66 +0.0
74,439 + Atu6062 0.67 +2.2
74,439 + Atu6062 0.67 -1.7
74,444 + Atu6062 0.67 +0.0
74,466 - Atu6062 0.70 -0.4
74,539 + Atu6062 0.80 +0.9
74,547 - Atu6062 0.81 +0.3
74,547 - Atu6062 0.81 +0.1
74,547 - Atu6062 0.81 +2.6
74,567 + Atu6062 0.83 -1.9
74,656 + +2.2
74,724 + -0.8
74,779 + +0.5
74,787 - -0.7
74,787 - +0.8
74,787 - +2.9
74,792 - +1.4
74,844 - +0.6
74,892 - +1.0
74,974 - +0.9
74,974 - +1.6
74,974 - +0.9
74,985 - -0.3
75,056 + Atu6063 0.12 +0.3
75,064 - Atu6063 0.13 +0.8
75,076 - Atu6063 0.14 -0.1
75,112 + Atu6063 0.16 +0.7
75,118 + Atu6063 0.16 +0.9
75,120 - Atu6063 0.16 +1.2
75,162 - Atu6063 0.19 +0.0
75,175 + Atu6063 0.20 +0.4
75,175 + Atu6063 0.20 +2.4
75,182 + Atu6063 0.20 +0.3
75,182 + Atu6063 0.20 -1.2
75,190 - Atu6063 0.21 +0.2
75,190 - Atu6063 0.21 +0.7
75,192 + Atu6063 0.21 +0.5
75,200 - Atu6063 0.21 -0.2
75,200 - Atu6063 0.21 +0.8
75,200 - Atu6063 0.21 +0.1
75,200 - Atu6063 0.21 +0.6
75,202 + Atu6063 0.21 +0.4
75,285 - Atu6063 0.26 +1.4
75,287 + Atu6063 0.27 -0.7
75,295 - Atu6063 0.27 -1.5
75,300 - Atu6063 0.27 +1.4
75,314 - Atu6063 0.28 +0.2
75,351 - Atu6063 0.30 -1.2
75,417 - Atu6063 0.35 +0.4
75,418 + Atu6063 0.35 +3.4
75,423 - Atu6063 0.35 +0.1
75,429 + Atu6063 0.35 +2.0
75,465 + Atu6063 0.37 +0.1
75,490 + Atu6063 0.39 +2.4
75,490 + Atu6063 0.39 -0.3
75,490 + Atu6063 0.39 -0.2
75,495 + Atu6063 0.39 +1.9
75,498 - Atu6063 0.39 -0.6
75,527 - Atu6063 0.41 +0.5
75,559 + Atu6063 0.43 +4.2
75,559 + Atu6063 0.43 -0.1
75,567 - Atu6063 0.44 +2.5
75,577 - Atu6063 0.44 -0.4
75,584 - Atu6063 0.45 +0.7
75,590 - Atu6063 0.45 +3.2
75,623 - Atu6063 0.47 -0.3
75,623 - Atu6063 0.47 +0.8
75,648 - Atu6063 0.49 -0.2
75,657 - Atu6063 0.49 -0.1
75,676 - Atu6063 0.50 -0.3
75,689 - Atu6063 0.51 +2.4

Or see this region's nucleotide sequence