Strain Fitness in Agrobacterium fabrum C58 around Atu5055

Experiment: Dextrin from potato starch (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu5052 and Atu5053 are separated by 72 nucleotidesAtu5053 and Atu5054 are separated by 9 nucleotidesAtu5054 and Atu5055 are separated by 11 nucleotidesAtu5055 and Atu5056 are separated by 324 nucleotides Atu5052: Atu5052 - small heat shock protein, at 51,311 to 51,787 Atu5052 Atu5053: Atu5053 - hypothetical protein, at 51,860 to 52,159 Atu5053 Atu5054: Atu5054 - hypothetical protein, at 52,169 to 52,444 Atu5054 Atu5055: Atu5055 - ATP-dependent DNA ligase, at 52,456 to 55,110 Atu5055 Atu5056: Atu5056 - hypothetical protein, at 55,435 to 56,250 Atu5056 Position (kb) 52 53 54 55 56Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 51.550 kb on - strand, within Atu5052at 51.556 kb on + strand, within Atu5052at 51.594 kb on + strand, within Atu5052at 51.657 kb on + strand, within Atu5052at 51.657 kb on - strand, within Atu5052at 51.737 kb on - strand, within Atu5052at 51.753 kb on + strandat 51.753 kb on + strandat 51.753 kb on + strandat 51.753 kb on + strandat 51.758 kb on + strandat 51.761 kb on - strandat 51.761 kb on - strandat 51.855 kb on + strandat 51.858 kb on - strandat 51.882 kb on - strandat 52.142 kb on + strandat 52.255 kb on - strand, within Atu5054at 52.278 kb on + strand, within Atu5054at 52.285 kb on - strand, within Atu5054at 52.318 kb on + strand, within Atu5054at 52.399 kb on + strand, within Atu5054at 52.399 kb on + strand, within Atu5054at 52.426 kb on - strandat 52.437 kb on - strandat 52.437 kb on - strandat 52.461 kb on - strandat 52.505 kb on + strandat 52.531 kb on - strandat 52.558 kb on + strandat 52.611 kb on + strandat 52.619 kb on - strandat 52.638 kb on - strandat 52.679 kb on - strandat 52.732 kb on + strand, within Atu5055at 52.782 kb on - strand, within Atu5055at 52.805 kb on + strand, within Atu5055at 52.812 kb on + strand, within Atu5055at 52.854 kb on + strand, within Atu5055at 52.932 kb on + strand, within Atu5055at 52.951 kb on - strand, within Atu5055at 52.955 kb on + strand, within Atu5055at 52.963 kb on - strand, within Atu5055at 52.987 kb on + strand, within Atu5055at 53.041 kb on - strand, within Atu5055at 53.059 kb on + strand, within Atu5055at 53.059 kb on + strand, within Atu5055at 53.133 kb on - strand, within Atu5055at 53.134 kb on - strand, within Atu5055at 53.134 kb on - strand, within Atu5055at 53.145 kb on + strand, within Atu5055at 53.145 kb on + strand, within Atu5055at 53.231 kb on + strand, within Atu5055at 53.239 kb on - strand, within Atu5055at 53.250 kb on + strand, within Atu5055at 53.258 kb on - strand, within Atu5055at 53.265 kb on + strand, within Atu5055at 53.265 kb on + strand, within Atu5055at 53.273 kb on - strand, within Atu5055at 53.293 kb on + strand, within Atu5055at 53.363 kb on + strand, within Atu5055at 53.370 kb on - strand, within Atu5055at 53.403 kb on + strand, within Atu5055at 53.411 kb on - strand, within Atu5055at 53.432 kb on - strand, within Atu5055at 53.495 kb on + strand, within Atu5055at 53.495 kb on + strand, within Atu5055at 53.551 kb on - strand, within Atu5055at 53.560 kb on - strand, within Atu5055at 53.562 kb on + strand, within Atu5055at 53.570 kb on - strand, within Atu5055at 53.575 kb on - strand, within Atu5055at 53.580 kb on - strand, within Atu5055at 53.625 kb on + strand, within Atu5055at 53.625 kb on + strand, within Atu5055at 53.633 kb on - strand, within Atu5055at 53.633 kb on - strand, within Atu5055at 53.723 kb on + strand, within Atu5055at 53.723 kb on + strand, within Atu5055at 53.723 kb on + strand, within Atu5055at 53.723 kb on + strand, within Atu5055at 53.724 kb on - strand, within Atu5055at 53.731 kb on - strand, within Atu5055at 53.731 kb on - strand, within Atu5055at 53.731 kb on - strand, within Atu5055at 53.733 kb on - strand, within Atu5055at 53.747 kb on + strand, within Atu5055at 53.764 kb on + strand, within Atu5055at 53.764 kb on + strand, within Atu5055at 53.842 kb on + strand, within Atu5055at 53.902 kb on + strand, within Atu5055at 53.902 kb on + strand, within Atu5055at 53.942 kb on - strand, within Atu5055at 54.056 kb on - strand, within Atu5055at 54.059 kb on + strand, within Atu5055at 54.077 kb on - strand, within Atu5055at 54.091 kb on - strand, within Atu5055at 54.207 kb on + strand, within Atu5055at 54.225 kb on - strand, within Atu5055at 54.301 kb on + strand, within Atu5055at 54.315 kb on - strand, within Atu5055at 54.353 kb on + strand, within Atu5055at 54.383 kb on + strand, within Atu5055at 54.495 kb on - strand, within Atu5055at 54.495 kb on - strand, within Atu5055at 54.537 kb on + strand, within Atu5055at 54.668 kb on + strand, within Atu5055at 54.692 kb on + strand, within Atu5055at 54.768 kb on - strand, within Atu5055at 54.788 kb on + strand, within Atu5055at 54.796 kb on + strand, within Atu5055at 54.796 kb on + strand, within Atu5055at 54.804 kb on - strand, within Atu5055at 54.820 kb on - strand, within Atu5055at 54.859 kb on - strandat 54.863 kb on - strandat 54.903 kb on + strandat 54.908 kb on + strandat 54.911 kb on - strandat 54.976 kb on - strandat 54.976 kb on - strandat 55.088 kb on + strandat 55.095 kb on - strandat 55.122 kb on + strandat 55.140 kb on + strandat 55.148 kb on - strandat 55.148 kb on - strandat 55.155 kb on + strandat 55.183 kb on - strandat 55.183 kb on - strandat 55.265 kb on + strandat 55.265 kb on + strandat 55.273 kb on - strandat 55.273 kb on - strandat 55.281 kb on - strandat 55.336 kb on - strandat 55.360 kb on + strandat 55.368 kb on - strandat 55.490 kb on - strandat 55.520 kb on + strand, within Atu5056at 55.523 kb on - strand, within Atu5056at 55.552 kb on + strand, within Atu5056at 55.560 kb on - strand, within Atu5056at 55.602 kb on + strand, within Atu5056at 55.608 kb on + strand, within Atu5056at 55.608 kb on + strand, within Atu5056at 55.616 kb on - strand, within Atu5056at 55.616 kb on - strand, within Atu5056at 55.616 kb on - strand, within Atu5056at 55.625 kb on + strand, within Atu5056at 55.633 kb on - strand, within Atu5056at 55.636 kb on + strand, within Atu5056at 55.677 kb on + strand, within Atu5056at 55.685 kb on - strand, within Atu5056at 55.704 kb on + strand, within Atu5056at 55.755 kb on + strand, within Atu5056at 55.789 kb on - strand, within Atu5056at 55.902 kb on + strand, within Atu5056at 55.910 kb on - strand, within Atu5056at 55.957 kb on + strand, within Atu5056at 55.957 kb on + strand, within Atu5056at 55.957 kb on + strand, within Atu5056at 55.957 kb on + strand, within Atu5056at 55.957 kb on + strand, within Atu5056at 55.957 kb on + strand, within Atu5056at 55.957 kb on + strand, within Atu5056at 55.957 kb on + strand, within Atu5056at 55.965 kb on - strand, within Atu5056at 55.965 kb on - strand, within Atu5056at 55.965 kb on - strand, within Atu5056at 55.988 kb on + strand, within Atu5056at 56.035 kb on - strand, within Atu5056at 56.035 kb on - strand, within Atu5056at 56.073 kb on + strand, within Atu5056at 56.073 kb on + strand, within Atu5056at 56.083 kb on - strand, within Atu5056

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Per-strain Table

Position Strand Gene LocusTag Fraction Dextrin from potato starch (C)
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51,550 - Atu5052 0.50 -0.4
51,556 + Atu5052 0.51 -0.3
51,594 + Atu5052 0.59 +0.0
51,657 + Atu5052 0.73 -1.4
51,657 - Atu5052 0.73 +0.1
51,737 - Atu5052 0.89 +1.0
51,753 + +1.2
51,753 + -0.4
51,753 + +0.6
51,753 + -0.3
51,758 + -0.6
51,761 - +0.6
51,761 - -0.1
51,855 + -1.0
51,858 - +0.4
51,882 - +0.9
52,142 + +1.5
52,255 - Atu5054 0.31 +0.6
52,278 + Atu5054 0.39 +0.0
52,285 - Atu5054 0.42 -0.2
52,318 + Atu5054 0.54 -0.4
52,399 + Atu5054 0.83 +0.6
52,399 + Atu5054 0.83 +1.0
52,426 - +0.8
52,437 - -1.0
52,437 - +1.8
52,461 - -0.6
52,505 + -0.8
52,531 - +0.1
52,558 + -0.6
52,611 + +1.8
52,619 - +0.2
52,638 - +3.8
52,679 - -0.7
52,732 + Atu5055 0.10 +0.4
52,782 - Atu5055 0.12 +0.4
52,805 + Atu5055 0.13 -0.7
52,812 + Atu5055 0.13 -0.6
52,854 + Atu5055 0.15 +0.7
52,932 + Atu5055 0.18 +0.3
52,951 - Atu5055 0.19 +0.8
52,955 + Atu5055 0.19 +1.5
52,963 - Atu5055 0.19 -0.2
52,987 + Atu5055 0.20 +0.8
53,041 - Atu5055 0.22 +0.4
53,059 + Atu5055 0.23 -0.5
53,059 + Atu5055 0.23 -1.7
53,133 - Atu5055 0.25 -0.8
53,134 - Atu5055 0.26 +0.9
53,134 - Atu5055 0.26 -0.8
53,145 + Atu5055 0.26 +0.1
53,145 + Atu5055 0.26 +0.9
53,231 + Atu5055 0.29 -0.4
53,239 - Atu5055 0.29 +0.6
53,250 + Atu5055 0.30 +0.2
53,258 - Atu5055 0.30 +2.8
53,265 + Atu5055 0.30 +1.6
53,265 + Atu5055 0.30 +2.2
53,273 - Atu5055 0.31 +0.1
53,293 + Atu5055 0.32 -2.2
53,363 + Atu5055 0.34 -0.3
53,370 - Atu5055 0.34 -0.4
53,403 + Atu5055 0.36 -0.3
53,411 - Atu5055 0.36 -0.2
53,432 - Atu5055 0.37 +0.8
53,495 + Atu5055 0.39 -0.7
53,495 + Atu5055 0.39 +1.2
53,551 - Atu5055 0.41 -0.4
53,560 - Atu5055 0.42 +0.5
53,562 + Atu5055 0.42 -0.2
53,570 - Atu5055 0.42 +0.3
53,575 - Atu5055 0.42 +1.4
53,580 - Atu5055 0.42 -0.5
53,625 + Atu5055 0.44 -0.1
53,625 + Atu5055 0.44 +1.1
53,633 - Atu5055 0.44 +1.2
53,633 - Atu5055 0.44 +1.8
53,723 + Atu5055 0.48 +0.5
53,723 + Atu5055 0.48 -1.0
53,723 + Atu5055 0.48 +0.9
53,723 + Atu5055 0.48 -0.9
53,724 - Atu5055 0.48 -0.6
53,731 - Atu5055 0.48 +3.8
53,731 - Atu5055 0.48 +2.2
53,731 - Atu5055 0.48 +0.4
53,733 - Atu5055 0.48 +0.5
53,747 + Atu5055 0.49 -0.0
53,764 + Atu5055 0.49 -0.3
53,764 + Atu5055 0.49 -0.0
53,842 + Atu5055 0.52 +1.6
53,902 + Atu5055 0.54 -0.4
53,902 + Atu5055 0.54 +1.0
53,942 - Atu5055 0.56 -0.8
54,056 - Atu5055 0.60 +0.9
54,059 + Atu5055 0.60 +0.2
54,077 - Atu5055 0.61 +0.4
54,091 - Atu5055 0.62 +0.4
54,207 + Atu5055 0.66 +0.3
54,225 - Atu5055 0.67 +1.0
54,301 + Atu5055 0.69 -0.1
54,315 - Atu5055 0.70 -0.1
54,353 + Atu5055 0.71 -0.6
54,383 + Atu5055 0.73 -0.5
54,495 - Atu5055 0.77 +0.4
54,495 - Atu5055 0.77 +0.7
54,537 + Atu5055 0.78 +3.2
54,668 + Atu5055 0.83 +1.4
54,692 + Atu5055 0.84 +1.1
54,768 - Atu5055 0.87 -2.4
54,788 + Atu5055 0.88 +0.5
54,796 + Atu5055 0.88 -0.3
54,796 + Atu5055 0.88 +0.0
54,804 - Atu5055 0.88 +1.8
54,820 - Atu5055 0.89 +1.4
54,859 - +0.2
54,863 - +0.1
54,903 + +0.2
54,908 + +2.2
54,911 - +1.2
54,976 - +2.4
54,976 - +1.0
55,088 + -0.6
55,095 - -0.6
55,122 + +0.7
55,140 + +0.6
55,148 - -0.2
55,148 - -1.2
55,155 + -1.0
55,183 - -0.0
55,183 - +0.3
55,265 + +0.1
55,265 + -0.5
55,273 - +0.0
55,273 - -0.4
55,281 - +0.1
55,336 - -0.6
55,360 + +1.1
55,368 - +1.8
55,490 - +1.9
55,520 + Atu5056 0.10 +0.2
55,523 - Atu5056 0.11 +2.0
55,552 + Atu5056 0.14 +1.1
55,560 - Atu5056 0.15 -1.3
55,602 + Atu5056 0.20 +1.3
55,608 + Atu5056 0.21 -0.7
55,608 + Atu5056 0.21 -0.9
55,616 - Atu5056 0.22 -1.4
55,616 - Atu5056 0.22 +0.6
55,616 - Atu5056 0.22 +0.7
55,625 + Atu5056 0.23 +1.1
55,633 - Atu5056 0.24 +0.2
55,636 + Atu5056 0.25 +0.1
55,677 + Atu5056 0.30 -0.7
55,685 - Atu5056 0.31 +1.2
55,704 + Atu5056 0.33 -0.0
55,755 + Atu5056 0.39 -0.1
55,789 - Atu5056 0.43 +0.5
55,902 + Atu5056 0.57 +1.2
55,910 - Atu5056 0.58 -0.2
55,957 + Atu5056 0.64 +0.3
55,957 + Atu5056 0.64 -0.1
55,957 + Atu5056 0.64 +1.8
55,957 + Atu5056 0.64 +0.8
55,957 + Atu5056 0.64 +1.0
55,957 + Atu5056 0.64 +1.2
55,957 + Atu5056 0.64 -1.4
55,957 + Atu5056 0.64 +2.0
55,965 - Atu5056 0.65 -0.1
55,965 - Atu5056 0.65 -0.3
55,965 - Atu5056 0.65 -1.2
55,988 + Atu5056 0.68 -2.0
56,035 - Atu5056 0.74 -0.8
56,035 - Atu5056 0.74 +0.7
56,073 + Atu5056 0.78 -0.2
56,073 + Atu5056 0.78 +1.0
56,083 - Atu5056 0.79 +0.8

Or see this region's nucleotide sequence