Strain Fitness in Agrobacterium fabrum C58 around Atu0700

Experiment: Dextrin from potato starch (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu0699 and Atu0700 are separated by 360 nucleotidesAtu0700 and Atu0701 are separated by 86 nucleotides Atu0699: Atu0699 - DNA mismatch repair protein MutL, at 697,138 to 698,958 Atu0699 Atu0700: Atu0700 - two component sensor kinase, at 699,319 to 700,986 Atu0700 Atu0701: Atu0701 - GGDEF family protein, at 701,073 to 702,425 Atu0701 Position (kb) 699 700 701Strain fitness (log2 ratio) -2 -1 0 1at 698.319 kb on - strand, within Atu0699at 698.393 kb on + strand, within Atu0699at 698.568 kb on + strand, within Atu0699at 698.605 kb on + strand, within Atu0699at 698.610 kb on + strand, within Atu0699at 698.618 kb on - strand, within Atu0699at 698.633 kb on - strand, within Atu0699at 698.665 kb on + strand, within Atu0699at 698.666 kb on - strand, within Atu0699at 698.738 kb on + strand, within Atu0699at 698.760 kb on - strand, within Atu0699at 698.772 kb on + strand, within Atu0699at 698.805 kb on - strandat 698.813 kb on - strandat 698.892 kb on + strandat 699.067 kb on + strandat 699.076 kb on + strandat 699.105 kb on - strandat 699.107 kb on + strandat 699.178 kb on - strandat 699.202 kb on - strandat 699.207 kb on - strandat 699.272 kb on - strandat 699.272 kb on - strandat 699.286 kb on + strandat 699.292 kb on + strandat 699.341 kb on + strandat 699.386 kb on - strandat 699.451 kb on - strandat 699.538 kb on - strand, within Atu0700at 699.554 kb on - strand, within Atu0700at 699.558 kb on + strand, within Atu0700at 699.615 kb on + strand, within Atu0700at 699.620 kb on + strand, within Atu0700at 699.648 kb on + strand, within Atu0700at 699.648 kb on + strand, within Atu0700at 699.648 kb on + strand, within Atu0700at 699.648 kb on + strand, within Atu0700at 699.648 kb on + strand, within Atu0700at 699.655 kb on + strand, within Atu0700at 699.656 kb on - strand, within Atu0700at 699.656 kb on - strand, within Atu0700at 699.656 kb on - strand, within Atu0700at 699.656 kb on - strand, within Atu0700at 699.656 kb on - strand, within Atu0700at 699.676 kb on + strand, within Atu0700at 699.684 kb on - strand, within Atu0700at 699.756 kb on - strand, within Atu0700at 699.773 kb on - strand, within Atu0700at 699.877 kb on + strand, within Atu0700at 699.970 kb on + strand, within Atu0700at 699.970 kb on + strand, within Atu0700at 699.970 kb on + strand, within Atu0700at 699.970 kb on + strand, within Atu0700at 699.970 kb on + strand, within Atu0700at 699.970 kb on + strand, within Atu0700at 699.970 kb on + strand, within Atu0700at 699.978 kb on - strand, within Atu0700at 699.978 kb on - strand, within Atu0700at 699.978 kb on - strand, within Atu0700at 699.978 kb on - strand, within Atu0700at 700.024 kb on + strand, within Atu0700at 700.032 kb on - strand, within Atu0700at 700.091 kb on + strand, within Atu0700at 700.116 kb on + strand, within Atu0700at 700.121 kb on + strand, within Atu0700at 700.177 kb on + strand, within Atu0700at 700.185 kb on - strand, within Atu0700at 700.192 kb on - strand, within Atu0700at 700.339 kb on - strand, within Atu0700at 700.380 kb on - strand, within Atu0700at 700.387 kb on - strand, within Atu0700at 700.512 kb on + strand, within Atu0700at 700.618 kb on - strand, within Atu0700at 700.674 kb on - strand, within Atu0700at 700.846 kb on + strandat 700.854 kb on - strandat 700.905 kb on + strandat 700.905 kb on + strandat 701.012 kb on - strandat 701.023 kb on - strandat 701.054 kb on + strandat 701.132 kb on - strandat 701.142 kb on - strandat 701.142 kb on - strandat 701.162 kb on + strandat 701.177 kb on + strandat 701.438 kb on + strand, within Atu0701at 701.446 kb on - strand, within Atu0701at 701.489 kb on + strand, within Atu0701at 701.654 kb on + strand, within Atu0701at 701.746 kb on + strand, within Atu0701at 701.885 kb on + strand, within Atu0701at 701.888 kb on - strand, within Atu0701at 701.888 kb on - strand, within Atu0701at 701.893 kb on - strand, within Atu0701at 701.903 kb on + strand, within Atu0701

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Per-strain Table

Position Strand Gene LocusTag Fraction Dextrin from potato starch (C)
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698,319 - Atu0699 0.65 +0.4
698,393 + Atu0699 0.69 -0.7
698,568 + Atu0699 0.79 +1.1
698,605 + Atu0699 0.81 +0.8
698,610 + Atu0699 0.81 +0.0
698,618 - Atu0699 0.81 +0.1
698,633 - Atu0699 0.82 +0.6
698,665 + Atu0699 0.84 +0.4
698,666 - Atu0699 0.84 -0.4
698,738 + Atu0699 0.88 +0.3
698,760 - Atu0699 0.89 +0.8
698,772 + Atu0699 0.90 -0.5
698,805 - +0.6
698,813 - +0.4
698,892 + +0.3
699,067 + -0.1
699,076 + -0.6
699,105 - +0.5
699,107 + -0.2
699,178 - +1.4
699,202 - +0.1
699,207 - -0.3
699,272 - -1.3
699,272 - +0.0
699,286 + +0.0
699,292 + +0.4
699,341 + +0.8
699,386 - -1.6
699,451 - -0.7
699,538 - Atu0700 0.13 -0.3
699,554 - Atu0700 0.14 -0.2
699,558 + Atu0700 0.14 -1.2
699,615 + Atu0700 0.18 -0.4
699,620 + Atu0700 0.18 -1.0
699,648 + Atu0700 0.20 +0.1
699,648 + Atu0700 0.20 -0.1
699,648 + Atu0700 0.20 -0.4
699,648 + Atu0700 0.20 +0.1
699,648 + Atu0700 0.20 -0.3
699,655 + Atu0700 0.20 -0.4
699,656 - Atu0700 0.20 -0.8
699,656 - Atu0700 0.20 -1.1
699,656 - Atu0700 0.20 -0.1
699,656 - Atu0700 0.20 -0.5
699,656 - Atu0700 0.20 +0.6
699,676 + Atu0700 0.21 -0.7
699,684 - Atu0700 0.22 +1.1
699,756 - Atu0700 0.26 +0.6
699,773 - Atu0700 0.27 +0.0
699,877 + Atu0700 0.33 +0.8
699,970 + Atu0700 0.39 +0.1
699,970 + Atu0700 0.39 -0.6
699,970 + Atu0700 0.39 -0.2
699,970 + Atu0700 0.39 +0.3
699,970 + Atu0700 0.39 +0.1
699,970 + Atu0700 0.39 -0.3
699,970 + Atu0700 0.39 -0.9
699,978 - Atu0700 0.40 +0.6
699,978 - Atu0700 0.40 +0.6
699,978 - Atu0700 0.40 +0.4
699,978 - Atu0700 0.40 +0.1
700,024 + Atu0700 0.42 +0.7
700,032 - Atu0700 0.43 -0.2
700,091 + Atu0700 0.46 -0.4
700,116 + Atu0700 0.48 +0.0
700,121 + Atu0700 0.48 -0.1
700,177 + Atu0700 0.51 +0.2
700,185 - Atu0700 0.52 +0.1
700,192 - Atu0700 0.52 -0.6
700,339 - Atu0700 0.61 +0.1
700,380 - Atu0700 0.64 -0.6
700,387 - Atu0700 0.64 -1.1
700,512 + Atu0700 0.72 -0.2
700,618 - Atu0700 0.78 -0.7
700,674 - Atu0700 0.81 -0.2
700,846 + +0.3
700,854 - -0.6
700,905 + -0.0
700,905 + -0.3
701,012 - -0.2
701,023 - -0.4
701,054 + -0.3
701,132 - -0.3
701,142 - -0.3
701,142 - -0.5
701,162 + -0.4
701,177 + -0.2
701,438 + Atu0701 0.27 +0.3
701,446 - Atu0701 0.28 -1.8
701,489 + Atu0701 0.31 +0.0
701,654 + Atu0701 0.43 -2.0
701,746 + Atu0701 0.50 -0.1
701,885 + Atu0701 0.60 +0.1
701,888 - Atu0701 0.60 -1.0
701,888 - Atu0701 0.60 +0.1
701,893 - Atu0701 0.61 +1.0
701,903 + Atu0701 0.61 +1.1

Or see this region's nucleotide sequence